Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 7.6e-167 590.5 312 100.0
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.4e-101 370.9 304 65.1
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.5e-77 293.1 313 57.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 6.1e-76 288.5 309 57.6
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 4.7e-68 262.3 316 52.5
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.6e-60 237.3 333 47.1
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.6e-60 236.1 331 48.0
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 7.8e-55 218.4 334 44.6
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.3e-54 216.9 333 44.1
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 3.0e-54 216.5 331 45.9
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 3.9e-54 216.1 332 46.1
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 8.6e-54 214.9 314 43.3
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 2.5e-53 213.4 330 41.8
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.5e-53 213.4 333 41.7
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.1e-52 210.3 319 45.1
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.7e-52 209.1 334 40.7
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.2e-52 208.8 319 45.1
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.2e-52 208.8 319 45.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.1e-51 208.0 319 45.5
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.1e-51 208.0 334 40.4
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.4e-51 207.6 349 42.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-51 207.2 319 42.0
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 6.8e-51 205.3 332 42.2
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 9.9e-50 201.4 320 43.8
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.8e-49 199.5 326 45.1
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.2e-48 196.4 324 37.7
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.1e-48 195.3 312 42.3
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.2e-47 194.5 312 42.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.7e-47 193.4 342 41.5
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 6.0e-47 192.2 331 43.8
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.3e-46 191.0 318 44.7
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.0e-46 189.9 320 38.4
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.9e-45 187.2 327 38.2
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 4.3e-45 186.0 323 39.3
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 9.6e-45 184.9 324 42.3
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 8.1e-44 181.8 327 40.4
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.4e-43 181.0 324 37.3
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.8e-43 180.6 324 37.3
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 2.4e-43 180.3 331 36.9
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.1e-43 179.9 325 40.3
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 2.0e-42 177.2 338 39.6
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.6e-42 175.3 327 41.6
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.9e-42 174.9 322 41.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 9.9e-42 174.9 332 37.0
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.3e-41 174.5 320 36.9
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.2e-41 173.7 316 38.9
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.9e-41 172.6 334 36.5
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 6.4e-41 172.2 325 36.6
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 6.4e-41 172.2 327 34.3
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 6.4e-41 172.2 330 37.0
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.4e-40 171.0 322 38.2
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.9e-40 170.6 289 39.1
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.9e-40 170.6 329 37.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 2.4e-40 170.2 239 42.7
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.4e-40 170.2 328 39.6
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.2e-40 169.9 331 35.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.4e-40 169.1 324 36.1
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 7.1e-40 168.7 334 36.2
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 9.3e-40 168.3 304 38.2
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.2e-39 167.9 336 38.4
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.2e-39 167.9 330 40.9
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 2.1e-39 167.2 323 37.8
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.5e-39 166.4 329 40.4
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.3e-38 164.5 305 38.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 3.0e-38 163.3 314 37.6
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.0e-38 163.3 324 35.8
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 3.3e-37 159.8 329 38.6
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 4.3e-37 159.5 333 36.3
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 9.6e-37 158.3 315 39.7
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.1e-36 157.1 318 35.8
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 2.8e-36 156.8 322 39.1
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.8e-36 156.8 318 36.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.8e-36 156.8 312 38.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 4.8e-36 156.0 326 36.8
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 4.8e-36 156.0 319 34.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.8e-36 156.0 329 40.7
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 8.1e-36 155.2 328 39.0
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.8e-35 154.1 314 36.3
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 6.9e-35 152.1 307 35.2
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 5.8e-34 149.1 322 34.2
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 6.4e-33 145.6 330 37.3
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 1.4e-32 144.4 335 36.7
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.4e-32 144.4 324 35.5
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 4.2e-32 142.9 328 34.1
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 1.6e-31 141.0 320 34.7
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-30 138.3 325 35.1
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-30 138.3 325 35.1
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.0e-30 138.3 323 35.0
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.0e-30 138.3 323 35.0
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.3e-30 137.9 297 34.7
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.0e-30 136.7 320 35.3
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 8.7e-30 135.2 330 35.5
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 8.7e-30 135.2 195 43.6
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.3e-29 133.3 320 35.3
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.4e-29 132.1 297 33.0
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.3e-28 131.3 315 36.5
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.6e-28 131.0 326 35.9
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 2.1e-28 130.6 334 32.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 2.8e-28 130.2 320 37.2
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 3.7e-28 129.8 327 36.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 3.7e-28 129.8 327 35.5
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 8.1e-28 128.6 317 36.0
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-27 127.9 322 34.5
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-27 127.5 327 34.9
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.4e-27 127.1 324 35.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.4e-27 127.1 321 32.7
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.1e-27 126.7 320 34.1
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 5.3e-27 125.9 327 34.9
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.3e-27 125.9 317 32.8
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 6.9e-27 125.6 304 32.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 9.0e-27 125.2 336 35.7
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.2e-26 124.8 330 34.8
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-26 124.8 319 37.9
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.6e-26 123.6 321 34.9
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.5e-26 122.9 318 31.8
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.2e-25 120.6 282 35.1
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.9e-25 120.2 324 36.1
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.9e-25 120.2 324 36.1
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.9e-25 120.2 324 36.1
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.8e-25 119.8 313 35.8
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 4.9e-25 119.4 302 33.4
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 6.4e-25 119.0 325 35.1
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 3.2e-24 116.7 275 32.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 9.3e-24 115.2 327 33.6
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.2e-23 114.8 301 37.5
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 3.5e-23 113.2 315 33.3
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 6.0e-23 112.5 152 40.1
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.3e-22 111.3 300 32.3
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.3e-22 111.3 182 37.4
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 6.7e-22 109.0 316 30.1
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.9e-21 107.5 307 37.1
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.9e-21 107.5 318 29.9
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 5.6e-21 105.9 283 35.3
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.3e-20 104.8 183 36.6
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.6e-20 104.4 260 33.8
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.1e-20 104.0 299 34.8
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 2.1e-20 104.0 264 33.7
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.1e-20 104.0 317 29.0
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.8e-20 103.6 312 30.8
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 3.7e-20 103.2 153 38.6
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 8.2e-20 102.1 307 34.5
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 8.2e-20 102.1 306 30.4
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 8.2e-20 102.1 328 32.9
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.4e-19 101.3 305 32.1
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 6.9e-19 99.0 193 34.7
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 5.8e-18 95.9 108 44.4
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 6.5e-17 92.4 148 36.5
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.7e-15 87.0 252 31.0
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 7.4e-13 79.0 131 36.6
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.3e-12 78.2 306 30.4
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 5.3e-11 72.8 151 35.1
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 2.6e-10 70.5 308 25.0
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.0e-09 68.6 184 35.9
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 1.4e-08 64.7 302 30.1


User provided reference genes

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