Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.9e-152 540.8 268 100.0
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.2e-105 385.6 268 77.2
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 6.0e-104 381.3 266 77.1
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.8e-93 345.9 283 68.2
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 7.6e-75 284.6 272 62.5
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-72 277.3 275 61.5
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.6e-72 276.9 267 58.1
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 2.1e-72 276.6 289 57.1
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 6.0e-72 275.0 271 61.6
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 7.9e-72 274.6 269 60.6
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.3e-71 273.1 275 60.7
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.3e-71 273.1 275 60.7
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 6.7e-71 271.6 273 60.1
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 9.6e-70 267.7 267 58.4
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.7e-69 265.8 275 59.3
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 8.2e-69 264.6 274 59.9
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.1e-68 262.7 232 63.4
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.0e-68 262.3 239 61.5
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.5e-67 260.4 268 59.7
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.6e-67 259.6 259 58.7
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 2.6e-67 259.6 283 59.7
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 4.2e-65 252.3 276 59.8
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 2.1e-64 250.0 197 67.0
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 3.5e-64 249.2 277 54.9
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.3e-63 247.3 277 58.1
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.3e-63 247.3 273 58.2
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 2.3e-63 246.5 278 56.1
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 8.7e-63 244.6 278 55.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.5e-62 243.8 284 55.3
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.3e-61 240.7 229 59.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.7e-61 239.2 232 62.9
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-60 236.9 245 60.8
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.8e-60 236.9 293 53.6
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.4e-60 236.5 302 51.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.2e-59 234.2 278 56.8
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.2e-59 234.2 311 53.1
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.2e-59 234.2 311 53.1
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.6e-59 233.0 245 60.4
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.2e-58 229.9 251 59.4
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.8e-58 229.2 318 50.9
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 5.0e-58 228.8 238 58.8
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.5e-57 225.3 236 56.4
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.0e-55 221.1 267 52.4
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.4e-55 220.7 278 55.4
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.3e-55 219.9 268 53.0
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.3e-55 219.9 225 58.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.3e-55 219.9 284 51.4
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 5.1e-55 218.8 270 55.2
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.3e-53 214.2 272 53.7
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 6.3e-53 211.8 204 60.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 2.4e-52 209.9 252 53.6
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 9.1e-52 208.0 283 51.2
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.6e-51 206.5 265 51.3
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.6e-51 206.5 233 55.4
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.4e-51 206.1 299 48.8
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.5e-51 205.7 244 54.9
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 6.5e-50 201.8 249 53.4
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 5.5e-49 198.7 280 49.3
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.4e-49 198.0 312 49.7
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 3.6e-48 196.1 273 49.5
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.0e-47 194.5 279 49.5
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 6.7e-47 191.8 226 51.8
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.5e-46 190.7 249 49.4
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.7e-46 188.7 276 48.6
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.7e-45 187.2 229 53.3
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.2e-45 186.8 278 47.8
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.4e-44 184.1 233 52.4
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 4.1e-44 182.6 261 48.3
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.2e-43 181.0 260 49.6
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.0e-43 180.3 285 44.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.0e-42 177.9 240 50.4
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.3e-42 177.6 228 53.5
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.2e-42 176.8 267 44.6
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 2.9e-42 176.4 254 48.4
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 5.0e-42 175.6 228 51.8
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 6.5e-42 175.3 244 50.0
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 4.2e-41 172.6 254 47.2
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 7.2e-41 171.8 256 48.4
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.7e-40 169.1 265 48.3
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.1e-40 168.7 243 49.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 6.1e-40 168.7 232 49.1
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.8e-39 167.2 228 50.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.9e-39 166.0 231 47.6
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 5.2e-39 165.6 250 47.6
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 7.4e-38 161.8 249 43.0
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-37 161.0 245 46.1
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.7e-37 159.5 232 50.4
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 4.8e-37 159.1 202 51.0
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 6.3e-37 158.7 248 47.2
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 8.2e-37 158.3 297 43.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-36 157.5 233 47.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.4e-36 157.5 233 47.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.1e-36 156.4 266 46.6
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 5.3e-36 155.6 232 47.4
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 7.0e-36 155.2 296 44.6
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.5e-35 152.9 265 44.5
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 3.5e-35 152.9 272 44.5
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 3.8e-34 149.4 211 45.5
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.1e-33 147.9 238 47.9
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 2.5e-33 146.7 264 45.1
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.4e-31 141.0 259 44.0
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.3e-31 140.2 203 49.3
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 3.0e-31 139.8 242 43.8
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 4.0e-31 139.4 241 44.0
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 8.8e-31 138.3 147 57.8
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 8.8e-31 138.3 204 51.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.0e-30 137.1 234 43.2
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.4e-30 136.3 199 49.2
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.7e-30 135.6 241 41.5
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 9.7e-30 134.8 201 46.8
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 9.7e-30 134.8 251 43.8
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.8e-29 133.3 236 42.8
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.1e-28 131.3 75 82.7
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.6e-27 127.5 228 39.5
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 3.5e-27 126.3 197 51.3
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 3.5e-27 126.3 166 51.8
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.5e-27 126.3 101 68.3
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.9e-27 125.6 228 45.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.9e-26 123.2 233 41.6
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 8.5e-26 121.7 219 38.8
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 8.5e-26 121.7 156 49.4
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.9e-25 120.6 212 47.2
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.2e-25 119.8 154 49.4
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.5e-25 119.0 231 45.5
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 9.4e-25 118.2 283 38.2
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.6e-24 117.5 230 47.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.1e-24 117.1 83 69.9
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.6e-24 116.3 176 50.0
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 6.8e-23 112.1 235 41.7
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 4.4e-22 109.4 238 41.2
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 2.2e-21 107.1 242 40.5
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.4e-20 104.4 259 40.5
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 7.0e-20 102.1 158 48.7
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-19 100.1 219 40.6
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.7e-19 100.1 219 40.6
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 4.5e-19 99.4 270 37.4
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.3e-18 97.8 230 37.8
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 5.0e-18 95.9 233 42.5
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 2.5e-17 93.6 223 34.5
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 7.2e-17 92.0 229 39.7
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 9.5e-17 91.7 260 37.3
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.4e-15 87.8 190 41.1
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.8e-15 87.4 245 35.9
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.3e-15 87.0 234 35.5
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 7.5e-14 82.0 197 40.6
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 9.8e-14 81.6 206 37.4
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.3e-13 79.0 245 37.1
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 5.9e-11 72.4 93 57.0
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.9e-10 70.1 96 44.8
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.9e-10 70.1 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.9e-10 70.1 43 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.5e-09 67.0 62 56.5
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 2.5e-09 67.0 164 31.7
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 9.5e-09 65.1 46 71.7
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 9.5e-09 65.1 51 62.7
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-08 63.5 79 43.0
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 4.7e-08 62.8 169 33.7
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.7e-08 62.8 134 35.8
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.1e-07 60.1 167 33.5
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 4.0e-07 59.7 159 41.5
TPR.G18805 Trifolium pratense HOM05D004123 ORTHO05D004768 1.5e-06 57.8 108 40.7
Eucgr.F02505 Eucalyptus grandis HOM05D001250 ORTHO05D000627 4.4e-06 56.2 117 29.9


User provided reference genes

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