Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.6e-197 691.8 337 100.0
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 7.4e-168 594.0 338 85.8
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 6.3e-159 564.3 322 83.9
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.6e-154 549.7 393 70.7
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 8.2e-151 537.3 338 76.3
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.1e-150 537.0 326 79.1
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 1.4e-147 526.6 328 76.5
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 4.2e-147 525.0 326 74.8
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 5.5e-147 524.6 327 74.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.4e-145 520.0 323 73.7
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.8e-145 519.6 321 76.3
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 3.9e-145 518.5 335 74.3
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 6.7e-145 517.7 319 75.9
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.0e-144 516.2 321 74.8
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.6e-144 515.8 321 75.1
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 4.4e-144 515.0 324 74.7
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 7.4e-144 514.2 318 73.3
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 6.3e-143 511.1 334 72.2
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.4e-142 510.0 330 74.2
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-142 509.6 326 75.5
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.8e-142 509.6 327 74.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 7.0e-142 507.7 321 74.1
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 7.0e-142 507.7 331 74.6
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 9.1e-142 507.3 326 74.5
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.1e-142 507.3 326 74.5
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.6e-141 505.8 324 74.7
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.5e-141 505.4 330 74.2
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 7.7e-141 504.2 325 72.3
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.3e-140 503.4 313 74.4
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.7e-140 503.1 336 71.7
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.2e-140 502.7 326 73.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 5.5e-139 498.0 349 69.3
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 6.1e-138 494.6 314 74.2
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 8.0e-138 494.2 317 72.6
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.4e-137 493.4 334 71.9
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.4e-137 493.4 372 65.3
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.8e-137 493.0 315 74.0
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 5.2e-137 491.5 324 71.6
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 5.2e-137 491.5 324 71.6
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 8.8e-137 490.7 314 73.6
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.5e-136 490.0 314 73.2
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 2.6e-136 489.2 331 71.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 4.4e-136 488.4 330 71.2
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 4.4e-136 488.4 324 71.9
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 7.4e-136 487.6 313 71.6
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 9.7e-136 487.3 349 69.9
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.3e-135 486.9 341 69.8
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.2e-135 486.1 328 69.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.1e-134 483.8 372 63.4
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.8e-134 483.0 328 70.1
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 7.0e-134 481.1 323 70.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 7.0e-134 481.1 315 71.1
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 7.0e-134 481.1 330 70.3
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.2e-133 480.3 323 70.6
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.6e-133 479.2 312 70.8
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 3.5e-133 478.8 304 75.0
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.5e-133 478.4 324 70.4
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 6.5e-132 474.6 308 74.7
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 4.7e-130 468.4 336 67.3
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 6.1e-130 468.0 333 68.8
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 8.0e-130 467.6 345 67.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.0e-129 467.2 333 68.8
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.0e-129 467.2 328 70.1
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.4e-129 466.8 333 68.8
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.3e-129 466.1 345 64.6
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.3e-129 466.1 345 64.6
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.2e-129 464.9 328 70.1
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.4e-128 461.8 314 70.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.7e-127 459.9 337 66.2
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.8e-127 459.1 339 65.5
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 6.3e-127 458.0 325 68.9
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.1e-126 455.3 326 68.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.3e-124 450.3 330 67.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.9e-123 446.4 298 71.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.2e-123 444.5 330 65.5
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.2e-122 443.7 301 71.4
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.1e-122 443.0 330 67.3
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.7e-122 441.8 320 66.6
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.5e-120 436.8 334 63.5
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.7e-120 434.9 298 69.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.4e-118 430.3 317 65.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.1e-118 429.1 306 68.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 4.1e-118 428.7 316 64.9
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.9e-117 424.9 274 74.8
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.8e-116 422.2 266 76.3
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.1e-115 420.6 269 73.6
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.1e-115 420.6 323 63.5
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.9e-115 419.9 262 73.7
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 4.2e-115 418.7 324 62.7
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.6e-114 416.8 375 58.1
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.0e-113 412.5 260 73.8
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 2.2e-111 406.4 324 60.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 8.3e-111 404.4 329 63.5
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.6e-109 400.2 324 61.1
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.7e-108 396.7 321 60.7
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.9e-108 396.0 248 75.0
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.9e-108 396.0 313 60.1
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 9.5e-107 391.0 251 72.9
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.3e-105 386.3 413 53.0
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 3.1e-105 386.0 329 57.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.1e-102 377.5 212 81.1
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.4e-102 377.1 321 58.9
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 7.0e-102 374.8 245 69.4
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 9.2e-102 374.4 322 60.9
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 3.5e-101 372.5 318 59.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 8.6e-100 367.9 349 55.0
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 5.6e-99 365.2 333 60.4
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.3e-99 364.8 336 59.5
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 9.5e-99 364.4 322 61.2
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.6e-98 363.6 314 61.8
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 2.1e-98 363.2 330 59.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.6e-98 362.5 230 74.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.1e-97 359.4 316 56.6
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-96 355.5 322 60.9
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.6e-93 347.1 325 60.6
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 3.5e-93 345.9 245 65.3
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.5e-91 340.5 296 58.1
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.6e-90 335.9 325 54.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.1e-89 334.3 291 58.8
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.3e-89 333.2 387 47.3
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.4e-88 328.9 281 59.8
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 6.2e-82 308.5 274 56.2
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.1e-77 293.5 256 56.2
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 6.4e-71 271.9 301 46.2
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.6e-69 267.3 306 43.8
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.3e-66 257.7 305 43.9
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.4e-64 249.6 302 43.0
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 7.6e-64 248.4 305 43.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.6e-61 240.7 153 75.2
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.3e-59 232.6 241 51.9
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.8e-58 229.2 139 71.2
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.4e-54 217.6 254 44.9
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.2e-53 214.5 163 65.0
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 6.0e-53 212.2 113 85.8
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 7.4e-51 205.3 251 41.8
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.3e-50 204.5 160 58.8
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 3.7e-50 203.0 315 41.0
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.9e-47 193.4 204 45.1
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.3e-44 184.5 248 41.9
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.5e-43 180.3 258 39.1
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.9e-38 164.1 326 34.7
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 2.5e-38 163.7 91 79.1
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 9.1e-33 145.2 269 34.2
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.2e-31 140.6 243 35.4
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.0e-28 131.7 393 30.0
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-28 131.7 248 33.5
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.4e-27 126.3 233 33.0
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.4e-25 120.6 84 67.9
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 7.0e-25 119.0 72 79.2
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 7.0e-25 119.0 72 79.2
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.6e-24 117.9 72 77.8
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-23 115.2 158 39.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.7e-23 114.4 302 30.8
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-23 114.4 163 36.2
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 5.5e-22 109.4 113 41.6
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 5.5e-22 109.4 114 39.5
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.0e-20 105.1 211 34.1
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.4e-17 94.0 304 26.0
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 5.3e-17 92.8 339 25.1
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.2e-16 91.7 60 70.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 6.5e-15 85.9 80 56.2
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 5.5e-14 82.8 96 46.9
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 1.5e-06 58.2 47 59.6


User provided reference genes

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