Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G063100 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.2e-83 313.2 157 100.0
CiPaw.16G039100 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.1e-20 102.1 148 53.4
CiPaw.16G063300 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.8e-16 89.4 95 57.9
Sabra14G0035900 Salix brachista HOM05D000448 ORTHO05D000291 6.1e-16 88.2 138 43.5
RcHm_v2.0_Chr2g0133631 Rosa chinensis HOM05D000448 ORTHO05D000291 8.0e-16 87.8 145 44.1
Manes.05G056601 Manihot esculenta HOM05D000448 ORTHO05D000291 1.0e-15 87.4 106 53.8
TAR369G0196 Trochodendron aralioides HOM05D000448 ORTHO05D000291 1.0e-15 87.4 136 44.9
Hma1.2p1_1623F.1_g294110 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.8e-15 86.7 127 44.1
Potri.001G443600 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.8e-15 86.7 133 45.9
Potri.001G444300 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.8e-15 86.7 133 45.9
Sabra14G0036000 Salix brachista HOM05D000448 ORTHO05D000291 3.0e-15 85.9 141 41.8
QL04p028629 Quercus lobata HOM05D000448 ORTHO05D000291 5.2e-15 85.1 141 40.4
Potri.014G050532 Populus trichocarpa HOM05D000448 ORTHO05D000291 6.8e-15 84.7 104 51.9
Hma1.2p1_2969F.1_g331020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.0e-14 83.2 127 41.7
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 2.6e-14 82.8 108 50.0
QL04p028764 Quercus lobata HOM05D000448 ORTHO05D000291 2.6e-14 82.8 137 40.1
Sabra14G0052400 Salix brachista HOM05D000448 ORTHO05D000291 2.6e-14 82.8 126 46.0
PGR004G2034 Punica granatum HOM05D000448 ORTHO05D000291 3.4e-14 82.4 127 43.3
PGR004G0201 Punica granatum HOM05D000448 ORTHO05D000291 7.5e-14 81.3 127 43.3
Dinv44044 Davidia involucrata HOM05D000448 ORTHO05D000291 1.7e-13 80.1 153 40.5
FAN23G0799 Fragaria x ananassa HOM05D000007 ORTHO05D005026 2.8e-13 79.3 165 40.6
Eucgr.D01263 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.9e-13 78.6 105 46.7
QL04p028736 Quercus lobata HOM05D000448 ORTHO05D000291 4.9e-13 78.6 152 40.1
CANSAT25G1737 Cannabis sativa HOM05D000448 ORTHO05D000291 8.3e-13 77.8 103 48.5
FvH4_1g05220 Fragaria vesca HOM05D000448 ORTHO05D000291 8.3e-13 77.8 165 38.8
Cfa017263 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.1e-12 77.4 114 46.5
Thecc.01G398500 Theobroma cacao HOM05D000448 ORTHO05D000291 1.4e-12 77.0 105 49.5
Manes.05G056701 Manihot esculenta HOM05D000448 ORTHO05D000291 2.4e-12 76.3 108 47.2
QL04p028978 Quercus lobata HOM05D000448 ORTHO05D000291 2.4e-12 76.3 133 41.4
COL.COLO4_12382 Corchorus olitorius HOM05D000448 ORTHO05D000291 3.1e-12 75.9 105 50.5
Glyma.18G247650 Glycine max HOM05D000448 ORTHO05D000291 3.1e-12 75.9 129 38.8
Cfa011049 Carpinus fangiana HOM05D000448 ORTHO05D000291 4.1e-12 75.5 112 44.6
CiPaw.13G024500 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.1e-12 75.5 129 38.8
Duzib268G1481 Durio zibethinus HOM05D000448 ORTHO05D000291 4.1e-12 75.5 134 42.5
Rhsim01G0141700 Rhododendron simsii HOM05D000448 ORTHO05D000291 4.1e-12 75.5 136 38.2
Thecc.01G399700 Theobroma cacao HOM05D000448 ORTHO05D000291 5.4e-12 75.1 105 48.6
Potri.014G050800 Populus trichocarpa HOM05D000448 ORTHO05D000291 7.0e-12 74.7 126 42.9
QL04p028872 Quercus lobata HOM05D000448 ORTHO05D000291 7.0e-12 74.7 119 45.4
FAN10G1399 Fragaria x ananassa HOM05D000448 ORTHO05D000291 9.2e-12 74.3 103 45.6
Glyma.18G247600 Glycine max HOM05D000448 ORTHO05D000291 1.2e-11 73.9 108 46.3
Phvul.008G049700 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 1.2e-11 73.9 117 40.2
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.6e-11 73.6 108 47.2
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.6e-11 73.6 118 43.2
FAN03G3153 Fragaria x ananassa HOM05D000448 ORTHO05D000291 2.0e-11 73.2 103 45.6
Sabra14G0038200 Salix brachista HOM05D000448 ORTHO05D000291 2.0e-11 73.2 134 38.8
Gohir.A12G097900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.7e-11 72.8 105 47.6
Gohir.D12G100900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.7e-11 72.8 105 48.6
PGR004G2256 Punica granatum HOM05D000448 ORTHO05D000291 2.7e-11 72.8 128 39.8
RcHm_v2.0_Chr1g0345971 Rosa chinensis HOM05D000448 ORTHO05D000291 3.5e-11 72.4 103 45.6
Gohir.D12G101250 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.9e-11 71.6 104 47.1
Gorai.008G110300 Gossypium raimondii HOM05D000448 ORTHO05D000291 5.9e-11 71.6 104 47.1
Nn7g38168 Nelumbo nucifera HOM05D000448 ORTHO05D000291 5.9e-11 71.6 135 37.8
Gorai.008G109800 Gossypium raimondii HOM05D000448 ORTHO05D000291 7.8e-11 71.2 105 47.6
Nn1g06105 Nelumbo nucifera HOM05D000448 ORTHO05D000291 7.8e-11 71.2 140 36.4
QL04p028789 Quercus lobata HOM05D000448 ORTHO05D000291 7.8e-11 71.2 155 36.1
Oeu011248.1 Olea europaea HOM05D000448 ORTHO05D000291 1.0e-10 70.9 107 44.9
Thecc.01G399600 Theobroma cacao HOM05D000448 ORTHO05D000291 1.0e-10 70.9 105 43.8
FvH4_7g09310 Fragaria vesca HOM05D000448 ORTHO05D000291 1.3e-10 70.5 103 44.7
FAN06G3977 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.3e-10 70.5 103 44.7
Gohir.A12G098066 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.3e-10 70.5 104 46.2
Cc02_g25350 Coffea canephora HOM05D000448 ORTHO05D000291 1.7e-10 70.1 149 38.3
Gohir.D12G101000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.7e-10 70.1 104 47.1
Gorai.008G109900 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.7e-10 70.1 104 47.1
Lj3A769T7 Lonicera japonica HOM05D000480 ORTHO05D000313 1.7e-10 70.1 137 35.8
Nn1g06104 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.3e-10 69.7 120 40.0
RcHm_v2.0_Chr5g0006001 Rosa chinensis HOM05D000448 ORTHO05D000291 2.3e-10 69.7 103 44.7
QL04p028825 Quercus lobata HOM05D000448 ORTHO05D000291 2.9e-10 69.3 154 37.7
Nn7g38091 Nelumbo nucifera HOM05D000448 ORTHO05D000291 3.8e-10 68.9 156 34.0
Potri.014G050900 Populus trichocarpa HOM05D000448 ORTHO05D000291 3.8e-10 68.9 116 44.0
GSVIVG01018306001 Vitis vinifera HOM05D000448 ORTHO05D000291 3.8e-10 68.9 108 41.7
Dinv44040 Davidia involucrata HOM05D000480 ORTHO05D000313 5.0e-10 68.6 166 31.9
FvH4_7g26641 Fragaria vesca HOM05D000448 ORTHO05D000291 5.0e-10 68.6 158 34.2
Hma1.2p1_0632F.1_g192470 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 5.0e-10 68.6 124 40.3
Prupe.2G121500 Prunus persica HOM05D000448 ORTHO05D000291 5.0e-10 68.6 103 41.7
Gorai.008G110200 Gossypium raimondii HOM05D000448 ORTHO05D000291 6.6e-10 68.2 104 45.2
Thecc.06G183100 Theobroma cacao HOM05D000448 ORTHO05D000291 6.6e-10 68.2 134 36.6
TWI14G0350 Tripterygium wilfordii HOM05D000448 ORTHO05D000313 6.6e-10 68.2 175 29.7
Lj3A768T6 Lonicera japonica HOM05D000480 ORTHO05D000313 8.6e-10 67.8 142 35.9
Sabra16G0198000 Salix brachista HOM05D000448 ORTHO05D000291 8.6e-10 67.8 148 34.5
GSVIVG01024471001 Vitis vinifera HOM05D000480 ORTHO05D000313 8.6e-10 67.8 157 32.5
Cfa011048 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.1e-09 67.4 89 49.4
QL04p028833 Quercus lobata HOM05D000448 ORTHO05D000291 1.1e-09 67.4 106 44.3
QL04p028865 Quercus lobata HOM05D000448 ORTHO05D000291 1.1e-09 67.4 138 35.5
GSVIVG01018305001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.1e-09 67.4 140 37.1
QL04p028951 Quercus lobata HOM05D000448 ORTHO05D000291 1.9e-09 66.6 106 42.5
Nn8g40300 Nelumbo nucifera HOM05D000480 ORTHO05D000313 3.3e-09 65.9 159 32.7
PGR004G1040 Punica granatum HOM05D000480 ORTHO05D000313 4.3e-09 65.5 162 33.3
Actinidia04972 Actinidia chinensis HOM05D000448 ORTHO05D000291 5.6e-09 65.1 153 30.7
Peaxi162Scf00103g10113 Petunia axillaris HOM05D000480 ORTHO05D000313 5.6e-09 65.1 106 37.7
Nn5g28713 Nelumbo nucifera HOM05D000448 ORTHO05D000291 7.3e-09 64.7 122 37.7
Thecc.01G399400 Theobroma cacao HOM05D000448 ORTHO05D000291 7.3e-09 64.7 114 41.2
AUR62007588 Chenopodium quinoa HOM05D000480 ORTHO05D000313 9.5e-09 64.3 121 35.5
Thecc.01G398400 Theobroma cacao HOM05D000448 ORTHO05D000291 1.2e-08 63.9 114 43.0
Cfa005586 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.6e-08 63.5 118 40.7
PGR004G0158 Punica granatum HOM05D000480 ORTHO05D000313 2.1e-08 63.2 163 33.1
QL04p028761 Quercus lobata HOM05D000448 ORTHO05D000291 2.1e-08 63.2 123 39.8
CANSAT56G2348 Cannabis sativa HOM05D000480 ORTHO05D000313 2.8e-08 62.8 149 32.9
AUR62007589 Chenopodium quinoa HOM05D000480 ORTHO05D000313 2.8e-08 62.8 118 34.7
Prupe.2G270400 Prunus persica HOM05D000480 ORTHO05D000313 2.8e-08 62.8 127 36.2
Thecc.01G398600 Theobroma cacao HOM05D000480 ORTHO05D000313 2.8e-08 62.8 124 37.9
Thecc.01G399800 Theobroma cacao HOM05D000448 ORTHO05D000291 2.8e-08 62.8 161 36.0
Ciclev10031687m.g Citrus clementina HOM05D000480 ORTHO05D000313 3.6e-08 62.4 162 31.5
Cc02_g25360 Coffea canephora HOM05D000480 ORTHO05D000313 3.6e-08 62.4 157 31.8
Duzib133G0800 Durio zibethinus HOM05D000448 ORTHO05D000291 4.7e-08 62.0 113 42.5
Actinidia21630 Actinidia chinensis HOM05D000480 ORTHO05D000313 6.1e-08 61.6 130 33.8
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 6.1e-08 61.6 142 31.7
Migut.B01505 Erythranthe guttata HOM05D000480 ORTHO05D000313 6.1e-08 61.6 129 36.4
Eucgr.D01208 Eucalyptus grandis HOM05D000448 ORTHO05D000291 6.1e-08 61.6 121 38.8
Gohir.D12G101200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 6.1e-08 61.6 104 43.3
Thecc.01G399200 Theobroma cacao HOM05D000448 ORTHO05D000291 8.0e-08 61.2 114 42.1
TAR375G1115 Trochodendron aralioides HOM05D000480 ORTHO05D000313 8.0e-08 61.2 155 29.0
Lj7A549T53 Lonicera japonica HOM05D000448 ORTHO05D000313 1.0e-07 60.8 104 40.4
Thecc.01G399100 Theobroma cacao HOM05D000448 ORTHO05D000291 1.0e-07 60.8 114 41.2
Actinidia19328 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.8e-07 60.1 137 33.6
Peaxi162Scf00853g00424 Petunia axillaris HOM05D000480 ORTHO05D000313 1.8e-07 60.1 135 34.8
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.3e-07 59.7 122 32.8
Cfa005587 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.3e-07 59.7 118 36.4
Cfa013603 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.3e-07 59.7 110 34.5
TAR375G0700 Trochodendron aralioides HOM05D000480 ORTHO05D000313 2.3e-07 59.7 115 36.5
COL.COLO4_10975 Corchorus olitorius HOM05D000480 ORTHO05D000313 3.0e-07 59.3 133 34.6
Eucgr.D01209 Eucalyptus grandis HOM05D000480 ORTHO05D000313 3.0e-07 59.3 156 32.1
FvH4_7g26700 Fragaria vesca HOM05D000448 ORTHO05D000313 3.0e-07 59.3 114 34.2
FAN06G3463 Fragaria x ananassa HOM05D000480 ORTHO05D000313 3.0e-07 59.3 114 34.2
HanXRQChr01g0017701 Helianthus annuus HOM05D000480 ORTHO05D000313 3.0e-07 59.3 160 28.8
Sabra14G0038000 Salix brachista HOM05D000448 ORTHO05D000291 3.0e-07 59.3 145 34.5
Thecc.03G145400 Theobroma cacao HOM05D000480 ORTHO05D000313 3.0e-07 59.3 131 31.3
TAR374G0173 Trochodendron aralioides HOM05D000448 ORTHO05D000313 3.0e-07 59.3 94 45.7
CARHR256890 Cardamine hirsuta HOM05D000448 ORTHO05D000291 4.0e-07 58.9 139 34.5
CiPaw.06G009000 Carya illinoinensis HOM05D000448 ORTHO05D000291 5.2e-07 58.5 106 37.7
Potri.015G111300 Populus trichocarpa HOM05D000448 ORTHO05D000313 5.2e-07 58.5 132 31.8
THA.LOC104811543 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 5.2e-07 58.5 136 33.8
Ciclev10024369m.g Citrus clementina HOM05D000480 ORTHO05D000313 6.8e-07 58.2 98 35.7
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 6.8e-07 58.2 152 28.9
Nn7g38092 Nelumbo nucifera HOM05D000448 ORTHO05D000291 6.8e-07 58.2 123 35.8
Potri.014G050700 Populus trichocarpa HOM05D000448 ORTHO05D000291 6.8e-07 58.2 102 36.3
Cfa021119 Carpinus fangiana HOM05D000448 ORTHO05D000291 8.9e-07 57.8 122 37.7
AUR62004076 Chenopodium quinoa HOM05D000480 ORTHO05D000313 8.9e-07 57.8 109 35.8
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 8.9e-07 57.8 140 32.1
BcaC01g06095 Brassica carinata HOM05D000448 ORTHO05D000291 1.2e-06 57.4 128 35.2
A03p16260 Brassica napus HOM05D000448 ORTHO05D000291 1.2e-06 57.4 123 35.8
C03p19150 Brassica napus HOM05D000448 ORTHO05D000291 1.2e-06 57.4 128 35.2
BolC3t14303H Brassica oleracea HOM05D000448 ORTHO05D000291 1.2e-06 57.4 128 35.2
BraA03t10917Z Brassica rapa HOM05D000448 ORTHO05D000291 1.2e-06 57.4 123 35.8
Carub.0008s1120 Capsella rubella HOM05D000448 ORTHO05D000291 1.2e-06 57.4 128 32.0
COL.COLO4_10974 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.2e-06 57.4 147 30.6
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 1.2e-06 57.4 125 37.6
Potri.012G113800 Populus trichocarpa HOM05D000480 ORTHO05D000313 1.2e-06 57.4 143 32.2
Sopen01g035650 Solanum pennellii HOM05D000448 ORTHO05D000313 1.2e-06 57.4 106 34.0
AT5G51160 Arabidopsis thaliana HOM05D000448 ORTHO05D000291 1.5e-06 57.0 128 35.2
Gohir.A12G097950 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.5e-06 57.0 99 41.4
Eucgr.D01212 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.0e-06 56.6 132 36.4
Manes.06G129901 Manihot esculenta HOM05D000448 ORTHO05D000291 2.0e-06 56.6 123 32.5
Sabra12G0082900 Salix brachista HOM05D000480 ORTHO05D000313 2.0e-06 56.6 126 33.3
Hma1.2p1_0632F.1_g192440 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 2.6e-06 56.2 152 29.6
Lsat_1_v5_gn_1_84340 Lactuca sativa HOM05D000448 ORTHO05D000313 2.6e-06 56.2 137 31.4
CARHR139950 Cardamine hirsuta HOM05D000480 ORTHO05D000313 3.4e-06 55.8 164 27.4
QL08p060190 Quercus lobata HOM05D000448 ORTHO05D000291 3.4e-06 55.8 161 33.5
VMungo0720G1807 Vigna mungo HOM05D000448 ORTHO05D000291 3.4e-06 55.8 145 32.4
Thhalv10015548m.g Eutrema salsugineum HOM05D000448 ORTHO05D000291 4.4e-06 55.5 133 30.8
Gohir.A12G098033 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.4e-06 55.5 104 38.5
QL04p028636 Quercus lobata HOM05D000448 ORTHO05D000291 4.4e-06 55.5 156 33.3
Carub.0004s2730 Capsella rubella HOM05D000480 ORTHO05D000313 5.8e-06 55.1 102 32.4
Eucgr.L02828 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.8e-06 55.1 140 36.4
PSO782G5375 Papaver somniferum HOM05D000480 ORTHO05D000313 5.8e-06 55.1 115 40.0
AL8G25420 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 7.5e-06 54.7 128 33.6
BolC4t22202H Brassica oleracea HOM05D000480 ORTHO05D000313 7.5e-06 54.7 143 27.3
Cpa.g.sc13.225 Carica papaya HOM05D000480 ORTHO05D000313 7.5e-06 54.7 125 32.8
Cfa005588 Carpinus fangiana HOM05D000448 ORTHO05D000291 7.5e-06 54.7 100 39.0
CiPaw.06G009500 Carya illinoinensis HOM05D000448 ORTHO05D000291 7.5e-06 54.7 123 34.1
Ciclev10033891m.g Citrus clementina HOM05D000480 ORTHO05D000313 7.5e-06 54.7 114 34.2
MD12G1231200 Malus domestica HOM05D000480 ORTHO05D000313 7.5e-06 54.7 149 32.9
Potri.014G050600 Populus trichocarpa HOM05D000448 ORTHO05D000291 7.5e-06 54.7 106 34.9
QL09p027393 Quercus lobata HOM05D000480 ORTHO05D000313 7.5e-06 54.7 56 48.2
BcaC02g12275 Brassica carinata HOM05D000480 ORTHO05D000313 9.8e-06 54.3 143 27.3
C04p05720 Brassica napus HOM05D000480 ORTHO05D000313 9.8e-06 54.3 143 27.3
BraA05t19464Z Brassica rapa HOM05D000480 ORTHO05D000313 9.8e-06 54.3 143 27.3
Gohir.D12G096850 Gossypium hirsutum HOM05D000448 ORTHO05D000291 9.8e-06 54.3 88 47.7
MD12G1230900 Malus domestica HOM05D000480 ORTHO05D000313 9.8e-06 54.3 117 35.9
Sp4g26800 Schrenkiella parvula HOM05D000480 ORTHO05D000313 9.8e-06 54.3 153 28.1
GSVIVG01003695001 Vitis vinifera HOM05D000480 ORTHO05D000313 9.8e-06 54.3 137 34.3


User provided reference genes

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