Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.2e-115 418.7 250 100.0
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.4e-94 350.1 223 88.3
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.6e-79 300.1 223 71.7
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.0e-77 293.1 201 79.1
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 2.7e-74 282.7 224 69.2
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 4.0e-62 242.3 207 69.6
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 7.1e-59 231.5 228 61.4
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.2e-58 230.7 229 57.6
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.2e-58 230.7 235 60.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.6e-58 230.3 229 60.3
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 2.7e-58 229.6 224 63.8
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 4.6e-58 228.8 202 64.9
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 7.9e-58 228.0 229 61.1
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 7.9e-58 228.0 227 60.8
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 4.3e-56 222.2 231 58.9
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 4.3e-56 222.2 212 60.4
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 7.4e-56 221.5 226 61.9
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.1e-55 219.9 205 62.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.8e-55 219.5 208 64.9
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.7e-55 219.2 212 61.8
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.7e-55 219.2 227 61.7
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.7e-55 219.2 259 61.8
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 4.8e-55 218.8 237 57.0
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.1e-54 216.1 208 63.9
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.1e-54 216.1 275 50.5
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 3.1e-54 216.1 216 62.0
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.1e-54 215.7 226 58.4
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.9e-54 214.9 227 61.2
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 6.9e-54 214.9 209 59.8
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 9.0e-54 214.5 206 62.1
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.5e-53 213.8 263 51.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.5e-53 213.8 202 59.4
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.6e-53 213.0 262 51.5
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.6e-53 213.0 263 51.0
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.6e-53 213.0 208 59.1
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 3.4e-53 212.6 206 62.1
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 5.9e-53 211.8 221 61.1
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.7e-52 210.3 213 60.6
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.7e-52 210.3 285 57.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 5.0e-52 208.8 259 62.9
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 6.5e-52 208.4 207 60.4
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 8.5e-52 208.0 202 60.9
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 8.5e-52 208.0 225 55.1
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.1e-51 207.6 209 58.9
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.4e-51 207.2 255 52.2
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.5e-51 206.5 212 59.4
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 9.3e-51 204.5 197 59.4
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.2e-50 204.1 210 58.6
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.2e-50 204.1 235 57.0
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 2.1e-50 203.4 208 61.5
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 3.6e-50 202.6 209 59.8
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.3e-49 200.7 246 50.8
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.8e-49 200.3 230 51.3
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 3.0e-49 199.5 250 50.0
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 3.9e-49 199.1 249 51.8
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.9e-49 199.1 234 56.4
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 5.1e-49 198.7 213 60.1
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 5.1e-49 198.7 187 60.4
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 2.5e-48 196.4 232 53.0
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 4.3e-48 195.7 272 50.0
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 9.7e-48 194.5 211 56.4
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.6e-47 193.7 203 60.1
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.2e-47 193.4 208 57.2
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 3.7e-47 192.6 211 57.8
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 4.8e-47 192.2 248 49.2
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 4.8e-47 192.2 232 52.2
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 6.3e-47 191.8 230 53.9
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.1e-46 189.5 232 50.9
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 2.0e-45 186.8 278 46.4
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.4e-45 186.0 209 53.1
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.3e-44 184.1 215 53.5
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.7e-44 183.7 214 54.2
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 2.9e-44 183.0 205 54.6
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 2.9e-44 183.0 199 55.3
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 6.5e-44 181.8 214 55.1
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 8.5e-44 181.4 214 53.7
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.1e-43 181.0 230 52.6
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.4e-43 180.6 202 54.0
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.9e-43 180.3 237 48.9
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 2.5e-43 179.9 329 41.6
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 4.2e-43 179.1 250 47.2
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 7.2e-43 178.3 229 52.0
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 9.4e-43 177.9 212 52.8
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 6.1e-42 175.3 240 47.9
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 7.9e-42 174.9 208 54.3
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-41 173.7 210 51.0
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.3e-41 173.3 206 52.9
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 5.1e-41 172.2 204 56.9
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 2.0e-40 170.2 150 68.0
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.0e-40 170.2 202 53.0
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 2.6e-40 169.9 205 51.2
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 7.4e-40 168.3 176 56.2
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 2.8e-39 166.4 202 49.0
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 3.7e-39 166.0 208 49.5
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 8.2e-39 164.9 218 48.2
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-38 164.1 208 49.5
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.8e-38 163.7 207 47.3
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 3.1e-38 162.9 202 50.5
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 4.1e-38 162.5 149 64.4
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 6.9e-38 161.8 212 50.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.0e-36 157.9 210 49.0
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-36 157.5 210 49.0
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 2.9e-36 156.4 183 53.6
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.9e-36 156.4 207 50.7
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 5.0e-36 155.6 212 48.6
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 5.0e-36 155.6 212 48.6
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.4e-35 154.1 202 48.0
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 9.4e-35 151.4 220 48.2
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 3.6e-34 149.4 208 46.6
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-34 148.7 207 49.3
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.4e-33 147.5 182 49.5
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.8e-33 147.1 202 47.5
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 2.3e-33 146.7 231 44.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 3.9e-33 146.0 254 40.2
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.1e-32 144.4 149 58.4
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-30 137.9 194 50.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 9.1e-30 134.8 225 44.4
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 7.7e-29 131.7 160 50.0
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.3e-28 131.0 177 46.3
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.1e-27 127.9 211 43.6
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 7.2e-27 125.2 274 38.0
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 9.4e-27 124.8 136 54.4
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 3.6e-26 122.9 172 46.5
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-26 122.1 187 44.9
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 6.1e-26 122.1 187 44.9
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 8.0e-26 121.7 194 42.3
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 8.0e-26 121.7 194 42.3
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.2e-24 117.9 162 47.5
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 5.7e-24 115.5 230 37.0
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 9.7e-24 114.8 105 63.8
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.7e-23 114.0 233 39.5
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.8e-23 113.2 155 45.8
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 6.3e-23 112.1 178 44.9
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.4e-22 110.9 158 47.5
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.8e-22 110.5 199 39.7
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-22 110.2 178 45.5
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 3.1e-22 109.8 191 40.8
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 5.3e-22 109.0 75 74.7
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.6e-21 107.5 73 75.3
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.0e-20 104.8 178 43.3
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.3e-20 104.4 139 47.5
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 7.2e-19 98.6 178 39.9
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.6e-18 97.4 143 45.5
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-17 94.0 63 74.6
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-17 94.0 63 74.6
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-17 94.0 63 74.6
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-17 94.0 63 74.6
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 5.2e-17 92.4 134 44.8
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 6.8e-17 92.0 60 76.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 6.8e-17 92.0 145 46.9
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 8.8e-17 91.7 56 82.1
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 8.8e-17 91.7 58 77.6
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 2.0e-16 90.5 169 39.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-16 90.1 56 80.4
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 3.4e-16 89.7 177 40.1
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.4e-16 89.7 75 65.3
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 3.7e-15 86.3 177 39.5
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 2.7e-13 80.1 54 74.1
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 3.8e-12 76.3 135 41.5
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.5e-12 75.5 107 48.6
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.5e-11 74.3 51 70.6
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-11 73.6 46 78.3
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 2.5e-11 73.6 46 78.3
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.2e-11 72.8 91 50.5
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 3.6e-10 69.7 51 68.6
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.7e-07 60.8 76 50.0
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.8e-07 60.1 116 36.2
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 1.1e-06 58.2 37 75.7
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 4.1e-06 56.2 130 31.5
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 9.2e-06 55.1 50 58.0


User provided reference genes

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