Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.6e-100 369.4 187 100.0
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 2.2e-76 289.3 187 80.2
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 4.5e-74 281.6 187 78.6
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 6.3e-68 261.2 190 74.2
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.8e-62 243.0 179 70.4
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 4.0e-62 241.9 185 68.1
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 3.3e-61 238.8 187 66.8
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 3.3e-61 238.8 187 66.8
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 9.7e-61 237.3 187 63.1
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 9.7e-61 237.3 188 67.0
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 1.3e-60 236.9 188 67.6
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 1.4e-59 233.4 192 66.1
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 7.0e-59 231.1 197 63.5
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 1.2e-58 230.3 175 68.6
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 1.0e-57 227.3 188 64.4
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 3.8e-57 225.3 188 64.4
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 5.0e-57 224.9 189 64.0
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 5.0e-57 224.9 190 64.2
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 8.5e-57 224.2 181 65.7
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 1.6e-55 219.9 185 61.1
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 2.7e-55 219.2 189 63.0
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 6.1e-55 218.0 191 63.9
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.4e-54 216.9 187 60.4
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 2.3e-54 216.1 185 60.5
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 4.0e-54 215.3 187 58.3
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 1.5e-53 213.4 175 62.9
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 4.4e-53 211.8 188 60.6
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 1.7e-52 209.9 182 62.6
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 4.8e-52 208.4 182 61.0
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 4.8e-52 208.4 187 59.9
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 6.3e-52 208.0 204 59.8
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 8.3e-52 207.6 188 58.5
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.4e-51 206.8 193 58.5
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 1.8e-51 206.5 190 59.5
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 3.1e-51 205.7 189 60.8
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 1.2e-50 203.8 181 58.6
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 2.7e-50 202.6 178 59.6
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 3.5e-50 202.2 190 57.4
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 4.5e-50 201.8 194 56.7
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 5.9e-50 201.4 191 56.5
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 2.9e-49 199.1 204 60.3
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 2.9e-49 199.1 182 60.4
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 5.0e-49 198.4 179 59.8
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 6.5e-49 198.0 179 57.5
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 6.5e-49 198.0 182 60.4
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 8.5e-49 197.6 193 57.5
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.5e-48 196.8 179 59.8
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.9e-48 196.4 185 56.8
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 2.5e-48 196.1 185 56.8
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 2.5e-48 196.1 196 58.7
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 4.7e-47 191.8 188 56.9
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 4.0e-46 188.7 184 57.1
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 1.2e-45 187.2 140 67.1
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 1.3e-44 183.7 187 53.5
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.3e-44 183.7 179 57.5
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 1.7e-44 183.3 182 52.7
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 2.8e-44 182.6 185 55.7
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 9.1e-43 177.6 170 55.3
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 4.5e-42 175.3 145 63.4
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 1.9e-40 169.9 168 55.4
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 1.2e-39 167.2 195 46.7
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 1.6e-39 166.8 160 53.8
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 1.6e-39 166.8 181 53.0
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 6.1e-39 164.9 182 50.5
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 4.0e-38 162.2 181 49.7
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 8.9e-38 161.0 196 44.9
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 1.5e-37 160.2 196 45.4
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 1.5e-37 160.2 204 52.5
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 1.3e-36 157.1 197 44.7
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 1.3e-36 157.1 197 44.7
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 1.3e-36 157.1 197 44.7
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 3.7e-36 155.6 194 44.8
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 3.7e-36 155.6 194 44.8
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 4.9e-36 155.2 196 44.9
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 6.4e-36 154.8 195 43.6
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 4.1e-35 152.1 181 46.4
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 5.4e-35 151.8 176 48.3
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 7.0e-35 151.4 198 44.4
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 7.8e-34 147.9 129 60.5
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 3.9e-33 145.6 195 44.6
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 7.0e-27 124.8 189 41.8
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 4.7e-23 112.1 183 42.1
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 6.2e-23 111.7 115 49.6
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 1.0e-17 94.4 172 41.3
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 1.6e-07 60.5 148 28.4
FAN13G0477 Fragaria x ananassa HOM05D001508 ORTHO05D001381 2.1e-07 60.1 128 31.2
RcHm_v2.0_Chr7g0195991 Rosa chinensis HOM05D001508 ORTHO05D001381 2.1e-07 60.1 122 32.0
FAN13G3277 Fragaria x ananassa HOM05D001508 ORTHO05D001381 2.8e-07 59.7 122 32.0
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.6e-07 59.3 134 29.1
FvH4_5g03720 Fragaria vesca HOM05D001508 ORTHO05D001381 6.2e-07 58.5 182 28.6
Glyma.03G147900 Glycine max HOM05D000180 ORTHO05D000099 6.2e-07 58.5 129 34.1
Glyma.19G151300 Glycine max HOM05D000180 ORTHO05D000099 8.1e-07 58.2 129 33.3
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 1.1e-06 57.8 107 33.6
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 1.8e-06 57.0 87 34.5
FAN04G1541 Fragaria x ananassa HOM05D001508 ORTHO05D001381 1.8e-06 57.0 105 34.3
CDE06G2414 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 2.4e-06 56.6 101 36.6
Cc07_g19920 Coffea canephora HOM05D001508 ORTHO05D001381 2.4e-06 56.6 101 33.7
FAN18G2213 Fragaria x ananassa HOM05D001508 ORTHO05D001381 2.4e-06 56.6 89 38.2
RcHm_v2.0_Chr3g0480301 Rosa chinensis HOM05D001508 ORTHO05D001381 2.4e-06 56.6 174 29.3
RcHm_v2.0_Chr2g0158861 Rosa chinensis HOM05D000180 ORTHO05D000099 3.1e-06 56.2 81 38.3
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 3.1e-06 56.2 122 27.9
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 4.0e-06 55.8 79 36.7
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 4.0e-06 55.8 79 36.7
Cfa010556 Carpinus fangiana HOM05D058412 ORTHO05D010079 4.0e-06 55.8 40 70.0
Cc02_g35990 Coffea canephora HOM05D000180 ORTHO05D000099 4.0e-06 55.8 98 34.7
Eucgr.E00814 Eucalyptus grandis HOM05D001508 ORTHO05D001381 4.0e-06 55.8 174 27.6
FAN05G0464 Fragaria x ananassa HOM05D000180 ORTHO05D000099 4.0e-06 55.8 81 37.0
Phvul.001G145900 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 4.0e-06 55.8 130 33.8
arahy.Tifrunner.gnm1.ann1.PDJ41Q Arachis hypogaea HOM05D000180 ORTHO05D000099 5.2e-06 55.5 110 36.4
CiPaw.05G078800 Carya illinoinensis HOM05D000180 ORTHO05D000099 5.2e-06 55.5 91 36.3
FvH4_6g42930 Fragaria vesca HOM05D000180 ORTHO05D000099 5.2e-06 55.5 85 36.5
FAN14G4538 Fragaria x ananassa HOM05D000180 ORTHO05D000099 5.2e-06 55.5 85 36.5
Phvul.001G145800 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 5.2e-06 55.5 130 32.3
AagrBONN_evm.TU.Sc2ySwM_344.2527 Anthoceros agrestis HOM05D000180 ORTHO05D000099 6.8e-06 55.1 105 38.1
BcaB08g34588 Brassica carinata HOM05D001508 ORTHO05D001381 6.8e-06 55.1 154 27.9
CDE03G0121 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 6.8e-06 55.1 81 40.7
PGR004G1159 Punica granatum HOM05D000180 ORTHO05D000099 6.8e-06 55.1 116 33.6
VMungo1383G1447 Vigna mungo HOM05D000180 ORTHO05D000099 6.8e-06 55.1 130 34.6
TAR381G1448 Trochodendron aralioides HOM05D000180 ORTHO05D000099 8.9e-06 54.7 76 36.8


User provided reference genes

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