Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.0e-128 461.8 229 100.0
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 9.0e-125 450.3 229 95.6
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 2.0e-124 449.1 229 96.5
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 3.4e-124 448.4 228 95.6
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 3.4e-124 448.4 229 96.1
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 96.9
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 95.6
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 5.8e-124 447.6 229 96.1
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 96.5
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 95.6
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 95.2
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 95.6
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 95.6
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 94.8
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.8e-123 444.9 226 96.0
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.8e-123 444.9 226 96.0
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 94.8
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 95.2
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 95.6
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 94.8
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 94.3
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.4e-122 443.0 226 95.6
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 94.3
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 94.3
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 94.7
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 93.4
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 93.4
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 93.0
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 93.8
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 93.4
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 93.0
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 92.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.7e-121 438.7 227 93.4
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 3.5e-121 438.3 227 93.0
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 3.5e-121 438.3 227 93.0
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 3.5e-121 438.3 229 92.6
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 4.6e-121 438.0 229 92.1
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 94.3
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 93.8
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 92.1
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.8
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.8
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.0e-120 436.8 227 93.8
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.3e-120 436.4 227 92.5
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.7e-120 436.0 229 91.7
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 92.1
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 5.1e-120 434.5 227 93.0
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 93.4
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 8.7e-120 433.7 229 93.4
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.1e-119 433.3 229 92.1
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.5e-119 433.0 227 92.1
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.5e-119 433.0 227 92.5
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.5e-119 432.2 229 91.3
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.3e-118 429.9 229 91.3
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 91.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 4.8e-118 427.9 229 90.8
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 8.1e-118 427.2 229 90.4
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.1e-117 426.8 220 93.2
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.8e-117 426.0 229 90.4
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 3.1e-117 425.2 228 90.8
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.6e-116 422.2 227 89.0
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 89.5
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 3.4e-116 421.8 228 89.9
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 7.6e-116 420.6 227 89.0
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 7.6e-116 420.6 229 89.1
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 7.6e-116 420.6 229 89.5
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 9.9e-116 420.2 227 88.5
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 9.9e-116 420.2 229 87.3
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 89.4
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 89.4
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 89.4
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 89.4
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 89.4
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.3e-115 419.9 231 89.2
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.7e-115 419.5 229 90.8
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 2.9e-115 418.7 227 89.0
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.9e-115 418.7 231 88.7
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 87.7
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 87.7
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 9.3e-114 413.7 227 87.2
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 1.2e-113 413.3 229 89.1
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 87.7
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 2.7e-113 412.1 236 86.0
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 3.5e-113 411.8 227 86.8
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 86.8
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 86.8
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 6.0e-113 411.0 229 87.3
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 86.8
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.3e-112 409.8 226 86.3
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.8e-112 409.5 227 86.3
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 2.3e-112 409.1 229 90.0
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 3.9e-112 408.3 226 86.3
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 8.7e-112 407.1 228 85.1
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 85.9
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 3.3e-111 405.2 254 79.9
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 5.6e-111 404.4 228 84.6
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 9.0e-109 397.1 227 83.7
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.7e-107 392.9 204 94.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.7e-105 385.6 202 92.6
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 7.9e-105 384.0 201 93.5
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 7.9e-105 384.0 229 83.8
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 5.1e-104 381.3 201 92.0
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.1e-102 375.9 191 97.4
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 8.2e-102 374.0 227 77.5
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.4e-101 372.5 190 96.3
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 4.0e-101 371.7 210 82.9
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 4.0e-101 371.7 229 77.7
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.5e-100 369.8 190 94.2
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.3e-99 366.7 229 75.5
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.3e-99 366.7 229 75.5
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.2e-99 365.9 200 89.0
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 8.4e-99 364.0 250 74.8
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.9e-98 362.8 219 82.6
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.5e-98 362.5 229 73.8
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.6e-97 359.8 233 79.4
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.8e-96 356.3 191 90.1
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 3.0e-96 355.5 185 94.6
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 5.1e-96 354.8 227 76.2
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.1e-95 353.6 187 92.5
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 3.7e-94 348.6 229 77.3
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.0e-91 340.5 228 70.6
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.4e-90 336.7 185 86.5
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.1e-87 327.0 226 72.6
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 3.4e-84 315.5 162 95.1
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 7.7e-84 314.3 164 92.7
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 8.8e-80 300.8 355 49.9
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-75 287.0 160 85.6
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.2e-70 267.7 160 76.9
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.9e-58 229.9 122 90.2
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.2e-57 227.3 154 69.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.8e-56 221.1 131 78.6
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.2e-36 157.5 140 58.6
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.5e-28 129.4 69 89.9
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 7.6e-23 111.7 62 75.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.0e-19 101.3 124 50.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 5.1e-19 99.0 152 42.1
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 86.7
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 4.4e-15 85.9 81 53.1
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 63 55.6
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 3.5e-12 76.3 79 49.4
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 6.0e-12 75.5 49 75.5
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.5e-10 70.1 82 52.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.8e-07 58.9 26 100.0


User provided reference genes

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