Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 2.0e-164 582.4 309 100.0
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.1e-120 437.2 294 77.9
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 2.4e-120 436.0 273 81.7
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 3.4e-111 405.6 308 70.5
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 3.4e-111 405.6 308 70.5
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.7e-110 403.3 307 69.4
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 3.8e-110 402.1 302 71.9
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 6.4e-110 401.4 301 75.1
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 1.1e-109 400.6 296 72.6
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 3.2e-109 399.1 300 70.7
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 4.2e-109 398.7 302 69.2
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 5.4e-109 398.3 294 71.1
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 5.4e-109 398.3 277 72.6
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 5.4e-109 398.3 300 72.0
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.0e-107 394.0 257 78.6
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.3e-107 393.7 301 70.8
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.8e-107 393.3 311 68.2
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.1e-106 390.6 301 68.1
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 2.1e-105 386.3 312 67.6
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 2.1e-105 386.3 301 68.8
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.7e-105 385.6 311 67.8
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 4.8e-105 385.2 308 68.2
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 8.1e-105 384.4 295 69.5
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 1.4e-104 383.6 249 78.3
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.4e-104 383.6 314 65.3
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 6.9e-104 381.3 306 67.3
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 9.0e-104 380.9 306 67.3
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.2e-103 380.6 302 69.2
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.0e-103 379.8 261 74.3
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.4e-103 379.0 274 72.6
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 7.6e-103 377.9 310 64.5
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 7.6e-103 377.9 302 68.5
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 2.2e-102 376.3 244 76.2
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 3.8e-102 375.6 309 66.7
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 4.9e-102 375.2 302 66.6
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 4.9e-102 375.2 337 62.9
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 6.5e-102 374.8 277 68.2
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 6.5e-102 374.8 290 66.6
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.1e-101 374.0 296 69.6
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.1e-101 374.0 264 71.2
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 1.9e-101 373.2 250 75.2
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.9e-101 373.2 251 74.9
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 3.2e-101 372.5 302 65.9
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 4.2e-101 372.1 300 65.7
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 5.5e-101 371.7 273 68.5
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 1.6e-100 370.2 287 65.9
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 3.5e-100 369.0 291 70.8
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 1.0e-99 367.5 250 72.4
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 2.3e-99 366.3 263 74.1
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 7.4e-98 361.3 295 68.1
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 9.6e-98 360.9 310 63.2
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 9.6e-98 360.9 232 77.6
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.1e-97 359.8 249 71.1
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.8e-97 359.4 258 71.3
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 3.7e-97 359.0 303 63.0
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 4.8e-97 358.6 301 64.1
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 1.4e-96 357.1 277 65.3
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.4e-96 356.3 291 67.7
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.4e-96 356.3 250 70.4
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 3.1e-96 355.9 269 68.8
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 4.1e-96 355.5 254 69.3
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 6.9e-96 354.8 304 61.5
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 1.2e-95 354.0 261 69.3
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 2.0e-95 353.2 305 65.2
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 2.0e-95 353.2 304 65.1
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.6e-95 352.8 301 62.1
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 3.4e-95 352.4 250 68.8
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.3e-94 350.5 267 65.2
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.9e-94 349.4 247 69.6
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 6.5e-94 348.2 272 67.6
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.1e-93 347.4 256 68.0
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.1e-93 347.4 271 66.1
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.1e-93 347.4 310 59.4
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 2.5e-93 346.3 276 67.8
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 4.2e-93 345.5 256 67.6
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 4.2e-93 345.5 256 68.0
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 5.5e-93 345.1 232 75.4
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 9.3e-93 344.4 256 67.2
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 1.6e-92 343.6 238 73.1
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 2.7e-92 342.8 266 65.4
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 4.6e-92 342.0 282 62.8
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 6.1e-92 341.7 275 65.8
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.3e-91 340.5 235 72.8
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 3.9e-91 339.0 275 64.0
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 8.7e-91 337.8 304 61.2
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 3.3e-90 335.9 344 53.8
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 3.7e-89 332.4 243 67.9
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 3.7e-89 332.4 271 62.7
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.4e-88 330.5 300 62.0
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 3.1e-88 329.3 264 65.9
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 2.0e-87 326.6 227 69.2
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 5.9e-87 325.1 349 53.0
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.7e-86 323.6 376 53.2
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 6.7e-83 311.6 419 46.5
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.7e-81 307.0 231 66.7
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 3.8e-78 295.8 211 70.6
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 6.5e-78 295.0 296 57.4
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 7.9e-76 288.1 188 78.2
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 5.1e-75 285.4 190 75.3
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.1e-74 284.3 269 52.8
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 7.4e-74 281.6 206 69.9
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 9.7e-74 281.2 271 50.6
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 1.3e-70 270.8 263 53.2
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 8.5e-70 268.1 211 61.1
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 4.4e-66 255.8 196 64.3
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 2.8e-65 253.1 256 55.5
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 5.3e-64 248.8 251 54.2
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.0e-63 246.9 270 52.6
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 2.9e-62 243.0 234 52.1
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 8.5e-62 241.5 171 71.9
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 9.4e-61 238.0 277 44.8
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 3.8e-54 216.1 259 46.3
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.1e-53 214.5 171 63.2
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.5e-53 213.4 210 58.1
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 3.0e-51 206.5 166 65.1
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.8e-48 197.2 249 43.8
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.3e-46 191.0 247 42.5
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 1.1e-45 188.0 144 63.9
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.8e-40 170.6 119 73.1
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 4.7e-36 156.0 202 43.6
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.7e-28 129.4 162 45.7
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 3.0e-22 110.2 79 63.3
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.5e-18 97.8 79 55.7


User provided reference genes

Program Settings