Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.3e-87 324.3 163 100.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.2e-75 286.6 163 86.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 6.1e-75 284.3 162 83.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.8e-72 274.6 163 81.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 6.9e-71 270.8 163 80.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.6e-70 268.9 163 79.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 5.9e-70 267.7 163 78.5
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.8e-69 265.0 163 78.5
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.8e-69 265.0 163 78.5
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.8e-69 265.0 163 79.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.8e-69 265.0 163 77.3
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.1e-68 263.5 163 80.4
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.1e-68 263.5 163 80.4
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.1e-68 263.5 162 76.5
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.1e-68 263.5 162 75.9
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.5e-68 262.3 162 76.5
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.5e-68 262.3 162 76.5
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.5e-68 262.3 163 79.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.2e-68 261.5 163 77.3
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 4.2e-68 261.5 163 78.5
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.5e-68 261.2 163 75.5
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.4e-68 260.4 163 75.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.6e-67 259.6 163 77.3
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.7e-67 258.8 163 74.8
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 3.6e-67 258.5 163 75.5
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.6e-67 258.1 163 77.9
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 6.1e-67 257.7 163 77.3
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 6.1e-67 257.7 163 76.1
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.9e-67 257.3 162 77.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 7.9e-67 257.3 163 76.7
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.9e-67 257.3 163 76.1
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.0e-66 256.9 161 77.0
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.0e-66 256.9 163 76.1
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-66 256.5 163 76.1
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.3e-66 255.8 163 74.8
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.3e-66 255.8 163 76.1
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 3.0e-66 255.4 163 76.7
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.0e-66 255.4 162 74.1
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.9e-66 255.0 163 76.1
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 3.9e-66 255.0 163 76.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.7e-66 254.2 163 77.3
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.8e-66 253.8 163 74.8
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.1e-65 253.4 163 73.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.5e-65 253.1 163 76.1
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.5e-65 253.1 163 73.6
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.0e-65 252.7 163 76.7
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.0e-65 252.7 163 76.7
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.0e-65 252.7 163 76.7
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-65 252.3 162 75.3
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-65 252.3 162 75.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 2.5e-65 252.3 162 72.8
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.5e-65 252.3 163 74.8
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.3e-65 251.9 162 73.5
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.3e-65 251.5 163 76.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.3e-65 251.5 163 74.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.3e-65 251.5 163 74.8
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 7.4e-65 250.8 162 74.7
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 7.4e-65 250.8 163 74.2
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.4e-65 250.8 163 74.8
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 9.7e-65 250.4 163 73.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 9.7e-65 250.4 163 74.8
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.2e-64 249.2 163 73.6
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.8e-64 248.8 162 72.8
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.7e-64 248.4 163 74.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 3.7e-64 248.4 162 74.1
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.7e-64 248.4 162 74.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 4.8e-64 248.1 163 73.0
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.8e-64 248.1 161 70.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.2e-64 247.3 150 79.3
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.4e-63 246.5 162 73.5
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.1e-63 245.4 163 73.0
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 3.1e-63 245.4 163 71.8
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-63 245.4 162 72.8
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.1e-63 245.4 163 72.4
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 4.1e-63 245.0 162 74.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.3e-63 244.6 163 69.9
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.9e-63 244.2 157 72.6
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.2e-62 243.4 163 73.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.2e-62 243.4 163 73.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.2e-62 243.4 163 73.0
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-62 243.4 163 71.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.6e-62 242.3 163 71.8
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.5e-62 241.5 163 71.2
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.5e-62 241.5 163 71.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 4.5e-62 241.5 163 71.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.0e-61 240.4 163 69.9
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-61 240.0 163 71.2
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-61 240.0 163 71.2
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-61 240.0 163 71.2
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.3e-61 240.0 163 71.2
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.7e-61 239.6 163 70.6
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.8e-61 238.4 163 70.6
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 3.8e-61 238.4 162 71.0
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 6.5e-61 237.7 163 69.9
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 6.5e-61 237.7 163 70.6
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 6.5e-61 237.7 163 68.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 6.5e-61 237.7 163 69.3
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 8.5e-61 237.3 163 69.9
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-60 236.9 147 78.2
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-60 236.5 163 70.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.4e-60 236.5 163 69.9
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.5e-60 235.7 163 70.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.5e-60 235.7 163 70.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.5e-60 235.7 163 67.5
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 4.2e-60 235.0 163 67.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-59 233.4 163 69.3
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.2e-59 233.4 163 69.9
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.2e-59 233.4 163 67.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.6e-59 233.0 163 69.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 3.6e-59 231.9 151 75.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.1e-59 231.1 163 68.7
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.4e-58 229.9 162 66.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.4e-58 229.9 163 67.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.8e-58 229.6 163 66.9
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.9e-58 228.4 162 66.7
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 6.7e-58 227.6 161 66.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.5e-57 226.5 163 66.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.5e-57 226.5 163 68.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.0e-57 226.1 163 65.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 9.7e-57 223.8 163 65.6
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.3e-56 223.4 163 65.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.7e-56 223.0 153 69.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.1e-55 220.3 144 70.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 9.1e-55 217.2 162 63.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.1e-55 217.2 147 71.4
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 9.1e-55 217.2 162 63.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.2e-54 216.9 162 62.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.0e-54 216.1 162 63.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 5.9e-54 214.5 144 68.8
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 7.7e-54 214.2 148 71.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.9e-53 212.2 163 62.0
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.2e-52 208.4 145 68.3
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 9.4e-52 207.2 163 60.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.8e-50 203.0 155 60.6
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.1e-49 200.3 147 64.6
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.7e-49 197.2 152 66.4
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-48 196.8 132 69.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.7e-48 196.4 144 66.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-48 195.7 163 62.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.4e-47 193.4 144 61.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.9e-46 188.0 147 66.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.9e-45 185.7 144 66.0
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 8.0e-43 177.6 112 74.1
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 7.0e-39 164.5 106 73.6
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.5e-36 156.0 162 48.1
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.3e-32 143.7 163 44.8
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.2e-32 142.9 145 52.4
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 5.9e-30 134.8 161 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.9e-29 132.5 162 40.1
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 5.5e-28 128.3 156 41.0
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-26 122.5 76 77.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.4e-18 97.1 86 58.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 8.9e-18 94.4 150 36.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 3.6e-11 72.4 71 47.9


User provided reference genes

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