Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G045100 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.5e-45 184.1 105 100.0
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.4e-16 89.0 99 51.5
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 9.1e-16 87.0 79 57.0
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.1e-12 75.9 79 50.6
QL02p005106 Quercus lobata HOM05D000955 ORTHO05D001429 2.1e-12 75.9 77 63.6
QL11p020910 Quercus lobata HOM05D000955 ORTHO05D001429 2.1e-12 75.9 77 62.3
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 1.0e-11 73.6 77 48.1
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 3.0e-11 72.0 77 46.8
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 4.0e-11 71.6 84 45.2
QL02p004928 Quercus lobata HOM05D000955 ORTHO05D001429 4.0e-11 71.6 80 65.0
QL02p005025 Quercus lobata HOM05D000955 ORTHO05D001429 4.0e-11 71.6 80 65.0
Thecc.08G008500 Theobroma cacao HOM05D000955 ORTHO05D001429 5.2e-11 71.2 79 67.1
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.8e-11 70.9 79 48.1
CiPaw.15G060400 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.0e-10 69.3 85 62.4
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 3.4e-10 68.6 80 51.2
CSS0002475 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.4e-10 68.6 80 61.2
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 5.7e-10 67.8 88 44.3
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 7.5e-10 67.4 76 44.7
Gorai.010G019100 Gossypium raimondii HOM05D000955 ORTHO05D001429 9.8e-10 67.0 92 52.2
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 1.7e-09 66.2 88 43.2
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.7e-09 66.2 88 39.8
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 1.7e-09 66.2 73 47.9
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.2e-09 65.9 76 46.1
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.2e-09 65.9 78 47.4
CSS0002643 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.8e-09 65.5 80 58.8
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.8e-09 65.5 92 40.2
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.8e-09 65.5 92 40.2
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.7e-09 65.1 75 45.3
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 3.7e-09 65.1 75 45.3
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 4.9e-09 64.7 83 42.2
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 4.9e-09 64.7 91 40.7
Gohir.D06G016200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.9e-09 64.7 75 58.7
QL02p005070 Quercus lobata HOM05D000955 ORTHO05D001429 4.9e-09 64.7 54 61.1
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 4.9e-09 64.7 79 45.6
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 6.3e-09 64.3 86 52.3
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.3e-09 64.3 78 47.4
CiPaw.16G045000 Carya illinoinensis HOM05D000955 ORTHO05D001429 6.3e-09 64.3 84 60.7
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.3e-09 64.3 76 46.1
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.3e-09 63.9 93 40.9
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 8.3e-09 63.9 82 46.3
Rhsim06G0049200 Rhododendron simsii HOM05D000955 ORTHO05D001429 8.3e-09 63.9 81 65.4
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.1e-08 63.5 76 43.4
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 1.1e-08 63.5 76 44.7
Rhsim07G0228700 Rhododendron simsii HOM05D000955 ORTHO05D001429 1.4e-08 63.2 80 53.8
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.4e-08 63.2 75 44.0
vmacro04454 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 1.4e-08 63.2 80 60.0
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 1.8e-08 62.8 87 41.4
Atru.chr13.684 Acer truncatum HOM05D000955 ORTHO05D001429 1.8e-08 62.8 64 50.0
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.8e-08 62.8 86 43.0
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 1.8e-08 62.8 83 48.2
Gohir.A06G017900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.8e-08 62.8 75 57.3
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 1.8e-08 62.8 89 39.3
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 1.8e-08 62.8 76 43.4
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.4e-08 62.4 82 45.1
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 2.4e-08 62.4 79 44.3
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 3.1e-08 62.0 77 44.2
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 3.1e-08 62.0 75 46.7
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 3.1e-08 62.0 75 46.7
vmacro21527 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 3.1e-08 62.0 53 60.4
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 4.1e-08 61.6 77 42.9
AUR62034571 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.1e-08 61.6 80 42.5
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.1e-08 61.6 75 44.0
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.1e-08 61.6 75 44.0
Sc26g0000780 Simmondsia chinensis HOM05D000955 ORTHO05D001429 4.1e-08 61.6 82 39.0
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 5.4e-08 61.2 81 43.2
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.4e-08 61.2 75 44.0
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 7.0e-08 60.8 75 44.0
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 7.0e-08 60.8 78 44.9
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.0e-08 60.8 75 42.7
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.0e-08 60.8 76 42.1
Sc15g0003450 Simmondsia chinensis HOM05D000955 ORTHO05D001429 7.0e-08 60.8 78 43.6
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 7.0e-08 60.8 66 45.5
Actinidia23270 Actinidia chinensis HOM05D000955 ORTHO05D001429 9.2e-08 60.5 51 58.8
Cfa018542 Carpinus fangiana HOM05D000955 ORTHO05D001429 9.2e-08 60.5 76 56.6
AUR62014426 Chenopodium quinoa HOM05D000955 ORTHO05D001429 9.2e-08 60.5 80 41.2
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 9.2e-08 60.5 76 44.7
FAN20G2972 Fragaria x ananassa HOM05D017863 ORTHO05D020646 9.2e-08 60.5 83 54.2
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.2e-08 60.5 76 40.8
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.2e-08 60.5 76 43.4
Atru.chr13.679 Acer truncatum HOM05D000955 ORTHO05D001429 1.2e-07 60.1 51 58.8
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 1.2e-07 60.1 80 41.2
Gohir.A01G119200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.2e-07 60.1 76 44.7
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.2e-07 60.1 76 42.1
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 1.6e-07 59.7 64 45.3
Gohir.D01G107400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.6e-07 59.7 76 44.7
Gorai.002G131800 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.6e-07 59.7 76 44.7
QL02p005131 Quercus lobata HOM05D000955 ORTHO05D001429 1.6e-07 59.7 86 38.4
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.6e-07 59.7 55 56.4
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.0e-07 59.3 76 44.7
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.0e-07 59.3 75 44.0
Potri.008G079066 Populus trichocarpa HOM05D000955 ORTHO05D001429 2.0e-07 59.3 75 46.7
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 2.0e-07 59.3 75 41.3
Ciclev10002944m.g Citrus clementina HOM05D000955 ORTHO05D001429 2.7e-07 58.9 88 52.3
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 2.7e-07 58.9 85 40.0
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.7e-07 58.9 79 41.8
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-07 58.9 75 41.3
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 3.5e-07 58.5 75 46.7
Solyc01g150126.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 3.5e-07 58.5 75 41.3
CSS0027110 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 4.5e-07 58.2 76 43.4
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 4.5e-07 58.2 86 37.2
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.5e-07 58.2 82 40.2
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.5e-07 58.2 82 40.2
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.5e-07 58.2 82 40.2
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 4.5e-07 58.2 81 39.5
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 4.5e-07 58.2 75 41.3
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 4.5e-07 58.2 76 43.4
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 4.5e-07 58.2 78 41.0
vmacro21528 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 4.5e-07 58.2 52 57.7
Atru.chr13.678 Acer truncatum HOM05D000955 ORTHO05D001429 5.9e-07 57.8 75 42.7
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 5.9e-07 57.8 89 37.1
Ah.05g171940 Amaranthus hybridus HOM05D000955 ORTHO05D001429 5.9e-07 57.8 80 40.0
CSS0009132 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 5.9e-07 57.8 76 43.4
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 5.9e-07 57.8 76 43.4
Nitab4.5_0001847g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.9e-07 57.8 75 48.0
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 7.7e-07 57.4 91 36.3
Nitab4.5_0000686g0190 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.7e-07 57.4 76 40.8
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 7.7e-07 57.4 76 40.8
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 7.7e-07 57.4 76 42.1
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.0e-06 57.0 86 37.2
Peaxi162Scf00252g00115 Petunia axillaris HOM05D000955 ORTHO05D001429 1.0e-06 57.0 66 60.6
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 1.0e-06 57.0 75 40.0
Manes.04G102900 Manihot esculenta HOM05D000955 ORTHO05D001429 1.3e-06 56.6 95 33.7
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.3e-06 56.6 76 38.2
CSS0046588 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.7e-06 56.2 75 44.0
CSS0049247 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.7e-06 56.2 76 40.8
PGSC0003DMG400007983 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.7e-06 56.2 75 41.3
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 2.3e-06 55.8 75 40.0
Manes.04G103100 Manihot esculenta HOM05D000955 ORTHO05D001429 2.3e-06 55.8 95 32.6
Nitab4.5_0001847g0020 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.3e-06 55.8 76 50.0
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 2.3e-06 55.8 53 50.9
Rhsim06G0049100 Rhododendron simsii HOM05D000955 ORTHO05D001429 2.3e-06 55.8 53 58.5
Nitab4.5_0010940g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.9e-06 55.5 74 48.6
CAN.G371.24 Capsicum annuum HOM05D000955 ORTHO05D001429 3.8e-06 55.1 75 36.0
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.8e-06 55.1 79 40.5
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 3.8e-06 55.1 79 40.5
Manes.04G102800 Manihot esculenta HOM05D000955 ORTHO05D001429 3.8e-06 55.1 86 34.9
Manes.04G103000 Manihot esculenta HOM05D000955 ORTHO05D001429 3.8e-06 55.1 95 33.7
PGSC0003DMG400008043 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.8e-06 55.1 65 41.5
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.8e-06 55.1 74 39.2
CAN.G371.23 Capsicum annuum HOM05D000955 ORTHO05D001429 5.0e-06 54.7 91 34.1
Cfa018535 Carpinus fangiana HOM05D000955 ORTHO05D001429 5.0e-06 54.7 75 46.7
COL.COLO4_08736 Corchorus olitorius HOM05D000955 ORTHO05D001429 5.0e-06 54.7 70 45.7
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 6.6e-06 54.3 85 36.5
CAN.G371.27 Capsicum annuum HOM05D000955 ORTHO05D001429 6.6e-06 54.3 76 55.3
Nitab4.5_0006312g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.6e-06 54.3 80 35.0
RcHm_v2.0_Chr6g0278331 Rosa chinensis HOM05D000955 ORTHO05D001429 6.6e-06 54.3 49 57.1
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 6.6e-06 54.3 76 40.8
CAN.G371.22 Capsicum annuum HOM05D000955 ORTHO05D001429 8.6e-06 53.9 76 39.5
Nitab4.5_0001722g0010 Nicotiana tabacum HOM05D001454 ORTHO05D001429 8.6e-06 53.9 75 50.7
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 8.6e-06 53.9 67 38.8
Sed0010424 Sechium edule HOM05D000955 ORTHO05D001429 8.6e-06 53.9 79 40.5
Sed0021895 Sechium edule HOM05D000955 ORTHO05D001429 8.6e-06 53.9 81 38.3


User provided reference genes

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