Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 0.0e+00 1615.1 822 100.0
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 0.0e+00 1142.9 882 72.1
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 6.0e-256 887.9 963 55.3
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 4.5e-251 871.7 967 54.4
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 3.9e-247 858.6 967 53.9
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.3e-141 508.1 970 38.5
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.4e-140 504.6 999 36.9
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 5.1e-138 496.1 983 36.1
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 3.7e-136 490.0 957 39.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 4.5e-134 483.0 987 37.6
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.7e-133 481.1 993 36.8
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.1e-131 474.2 1028 35.5
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.1e-127 459.9 968 36.4
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.0e-127 458.8 966 36.3
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.2e-126 458.4 966 36.6
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.9e-123 445.7 964 36.0
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.9e-122 443.4 961 35.7
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.1e-121 441.8 1015 34.3
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 9.4e-116 422.2 878 36.4
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 3.6e-115 420.2 963 34.6
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 7.9e-115 419.1 856 36.4
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 2.3e-114 417.5 977 34.0
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 2.3e-114 417.5 986 34.4
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 1.1e-113 415.2 972 34.9
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 3.3e-113 413.7 995 33.8
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 8.5e-109 399.1 895 36.5
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.0e-106 390.6 920 35.1
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 3.0e-106 390.6 925 36.8
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.3e-105 387.1 910 35.2
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.4e-105 386.7 959 33.0
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.4e-103 381.7 905 34.8
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.6e-102 378.3 937 36.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 2.0e-102 377.9 903 35.3
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.0e-102 377.9 903 35.5
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 5.0e-101 373.2 934 33.4
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 8.5e-101 372.5 944 33.4
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.1e-100 372.1 833 35.3
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.9e-100 371.3 953 33.4
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.5e-100 370.9 695 38.4
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.4e-98 365.2 702 38.0
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.4e-97 360.1 967 32.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 3.1e-95 354.0 943 33.8
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 3.1e-95 354.0 945 32.2
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 2.7e-94 350.9 904 33.4
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 3.5e-94 350.5 909 33.7
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.2e-91 342.0 1097 29.6
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.6e-91 340.5 903 33.0
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 4.4e-89 333.6 945 33.9
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 4.8e-88 330.1 924 31.8
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.2e-86 325.5 925 31.6
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 7.2e-84 316.2 1026 29.3
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.8e-82 311.6 948 30.7
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 6.8e-82 309.7 946 30.9
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 4.4e-81 307.0 895 31.4
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.3e-80 305.4 977 30.0
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 3.7e-80 303.9 953 31.0
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 9.2e-79 299.3 845 29.8
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.0e-73 281.6 855 31.0
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 3.4e-73 280.8 884 30.2
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.9e-72 277.7 823 32.2
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 9.2e-71 272.7 770 31.9
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.6e-70 271.9 857 29.8
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 7.8e-70 269.6 968 29.1
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 4.3e-68 263.8 816 30.8
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.2e-67 262.3 918 28.8
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.1e-67 261.5 836 29.7
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 4.0e-66 257.3 729 32.6
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.2e-65 255.8 793 30.3
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 2.0e-65 255.0 881 28.7
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 2.6e-65 254.6 972 28.3
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 4.9e-64 250.4 816 29.3
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 6.4e-64 250.0 827 29.7
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.9e-63 248.4 809 30.0
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.9e-63 248.4 808 28.6
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 3.2e-63 247.7 809 30.0
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 5.4e-63 246.9 807 29.5
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 2.7e-62 244.6 800 30.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 6.0e-62 243.4 813 29.4
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 3.9e-61 240.7 811 29.1
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 6.6e-61 240.0 942 28.3
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 3.3e-60 237.7 782 28.8
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 3.3e-60 237.7 972 28.2
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 5.6e-60 236.9 981 27.2
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 3.1e-58 231.1 626 32.3
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 3.7e-56 224.2 828 29.6
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.9e-55 221.9 810 29.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.6e-54 217.2 912 27.4
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.1e-52 212.6 908 27.1
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 1.1e-52 212.6 655 28.4
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.5e-52 212.2 813 27.2
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 6.2e-51 206.8 780 27.9
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 6.2e-51 206.8 811 26.9
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.4e-50 205.7 930 26.9
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 4.4e-49 200.7 794 27.8
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 5.8e-49 200.3 902 26.9
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 2.4e-47 194.9 632 29.6
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 1.2e-46 192.6 236 47.5
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 1.5e-44 185.7 780 27.6
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.6e-43 182.2 744 27.2
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 6.9e-42 176.8 739 27.5
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.5e-41 175.6 849 25.1
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.7e-40 172.2 846 24.7
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 5.4e-39 167.2 626 28.6
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 9.3e-39 166.4 863 25.5
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.1e-36 159.5 780 25.0
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-33 149.4 561 27.8
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 2.2e-32 145.2 291 36.8
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-31 142.9 439 31.2
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-31 142.9 439 31.2
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 4.2e-31 141.0 494 27.5
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 9.3e-31 139.8 439 31.0
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 2.3e-29 135.2 295 36.9
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.1e-26 124.8 457 26.7
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 6.5e-24 117.1 467 29.6
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.5e-23 115.2 627 25.2
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 3.7e-19 101.3 169 37.9
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 3.7e-19 101.3 375 24.3
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 4.8e-19 100.9 365 25.5
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 8.2e-19 100.1 132 42.4
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.1e-18 99.8 325 28.9
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 9.0e-18 96.7 315 27.6
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 9.0e-18 96.7 317 29.7
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.9e-16 91.7 106 46.2
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.4e-16 90.1 730 23.3
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 7.9e-14 83.6 363 25.9
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 3.9e-13 81.3 150 34.7
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 3.1e-10 71.6 203 29.1
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.1e-07 63.2 257 26.5
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 2.7e-06 58.5 82 40.2


User provided reference genes

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