Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 8.5e-123 443.7 231 100.0
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.1e-101 372.1 231 82.3
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.1e-98 363.6 229 79.5
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.1e-98 363.6 228 79.4
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 5.5e-98 361.3 228 79.8
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 7.2e-98 360.9 228 79.4
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.6e-97 359.8 228 80.3
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.6e-97 359.8 231 77.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 2.1e-97 359.4 231 77.5
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 4.7e-97 358.2 228 78.5
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.5e-95 353.2 231 76.2
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.0e-95 352.8 231 77.5
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 2.0e-95 352.8 230 77.0
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.3e-95 352.1 231 76.2
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 3.3e-95 352.1 228 78.9
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 7.5e-95 350.9 231 76.6
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 7.5e-95 350.9 231 76.6
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.7e-94 349.7 228 75.9
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.2e-94 349.4 230 77.8
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 6.3e-94 347.8 229 75.1
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.4e-93 346.7 231 75.3
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.4e-93 346.7 228 75.4
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.4e-93 346.7 231 74.0
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.4e-93 345.9 231 75.8
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.4e-93 345.9 231 75.8
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 3.1e-93 345.5 231 74.9
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 7.0e-93 344.4 231 73.6
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.0e-92 342.8 231 72.7
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 3.5e-92 342.0 231 74.5
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.0e-91 340.5 231 75.3
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.0e-91 340.5 231 74.5
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 2.9e-91 339.0 231 75.3
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.8e-91 338.6 231 73.6
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 5.0e-91 338.2 231 73.2
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 6.5e-91 337.8 231 72.7
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.1e-90 337.0 222 76.1
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.5e-90 336.7 233 74.7
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.5e-90 335.9 228 74.1
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 2.5e-90 335.9 233 76.0
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 5.5e-90 334.7 231 72.3
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 9.4e-90 334.0 231 74.5
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.6e-89 333.2 228 71.9
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.7e-89 332.4 228 74.6
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 3.6e-89 332.0 232 72.4
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 4.7e-89 331.6 228 74.1
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.0e-88 330.5 229 73.4
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.4e-88 330.1 228 73.2
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.8e-88 329.7 231 72.3
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.3e-88 329.3 228 72.8
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.0e-88 328.6 228 73.2
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 5.2e-88 328.2 228 70.6
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 6.8e-88 327.8 230 70.9
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 8.8e-88 327.4 228 70.2
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.2e-87 327.0 277 63.2
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 2.0e-87 326.2 228 69.7
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 5.7e-87 324.7 228 71.1
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 7.5e-87 324.3 255 64.3
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 7.5e-87 324.3 228 71.9
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 9.8e-87 323.9 231 69.3
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.3e-86 323.6 228 71.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.2e-86 322.8 202 79.7
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 3.7e-86 322.0 211 79.1
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 4.8e-86 321.6 228 71.5
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 4.8e-86 321.6 228 71.5
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.8e-86 321.6 227 70.9
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 6.3e-86 321.2 228 71.1
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.4e-85 320.1 228 68.9
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.4e-85 320.1 228 68.9
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.4e-85 319.3 196 80.6
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 5.4e-85 318.2 298 58.1
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.7e-84 315.8 231 68.0
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.3e-83 313.5 267 61.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.3e-83 313.5 231 64.9
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.7e-83 313.2 231 69.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.9e-83 312.4 199 78.9
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.8e-83 312.0 199 77.9
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 8.6e-83 310.8 230 68.3
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.3e-82 308.9 199 77.4
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 5.5e-82 308.1 226 69.9
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 7.2e-82 307.8 228 70.2
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 9.5e-82 307.4 199 75.4
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 6.1e-81 304.7 232 69.8
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 6.1e-81 304.7 232 69.8
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 8.0e-81 304.3 198 77.8
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.8e-80 303.1 201 74.6
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 4.0e-80 302.0 201 74.6
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 7.5e-79 297.7 231 65.4
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.9e-78 295.0 230 65.7
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.1e-77 293.9 228 63.2
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.4e-77 293.5 256 64.1
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.7e-75 286.6 230 63.0
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.3e-75 286.2 230 63.5
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.0e-75 285.0 232 61.6
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 5.0e-75 285.0 191 72.8
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.6e-75 284.6 228 67.1
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.1e-74 283.9 182 75.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.9e-74 283.1 216 67.6
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.5e-74 282.7 223 66.4
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.8e-72 276.6 231 60.6
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.0e-72 275.4 206 69.9
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.9e-70 268.5 234 61.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.1e-69 267.3 187 72.7
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.9e-69 266.5 161 81.4
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 2.4e-69 266.2 229 59.0
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 2.4e-69 266.2 229 59.0
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 5.4e-69 265.0 229 59.4
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 5.4e-69 265.0 229 58.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 7.0e-69 264.6 162 79.6
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 2.0e-68 263.1 229 58.1
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.7e-67 260.0 205 66.8
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.9e-66 256.5 162 80.2
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.9e-66 256.5 188 66.0
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.3e-66 255.8 228 57.5
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.8e-65 252.7 220 55.0
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 6.2e-65 251.5 224 55.8
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.0e-65 251.1 234 56.4
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.7e-62 243.4 224 54.5
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.9e-62 242.7 228 59.2
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.2e-61 239.2 142 83.8
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 5.1e-59 231.9 142 78.9
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.6e-59 231.5 233 57.5
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.1e-56 224.2 221 52.0
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 5.2e-56 221.9 226 50.4
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.3e-54 214.5 199 59.8
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.1e-49 199.9 121 81.0
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 4.7e-49 198.7 166 58.4
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.1e-45 187.6 130 70.8
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.1e-45 187.6 130 72.3
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.7e-41 172.2 231 43.7
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 5.3e-40 168.7 104 77.9
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 9.9e-39 164.5 228 44.3
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.8e-38 162.5 99 79.8
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.9e-38 162.2 95 78.9
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 8.4e-38 161.4 109 75.2
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 8.7e-35 151.4 95 77.9
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 9.6e-34 147.9 107 72.0
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 8.1e-33 144.8 258 39.1
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 7.9e-28 128.3 138 47.8
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.9e-27 125.9 214 35.5
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.1e-24 116.3 83 68.7
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.0e-24 115.9 219 32.0
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 8.4e-22 108.2 108 56.5
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 3.3e-18 96.3 219 30.6
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 3.3e-18 96.3 219 30.6
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 3.7e-17 92.8 74 59.5
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 7.6e-15 85.1 51 76.5
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.7e-14 84.0 65 64.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.5e-12 76.3 205 31.2
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 8.7e-11 71.6 44 77.3
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.6e-09 67.4 48 70.8
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 8.2e-09 65.1 52 65.4
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.1e-08 63.2 82 40.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-07 61.2 45 66.7
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 4.5e-07 59.3 46 63.0
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 8.5e-06 55.1 54 51.9


User provided reference genes

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