Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.2e-167 593.2 331 100.0
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.7e-129 466.5 330 79.1
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.4e-126 456.8 322 75.2
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.3e-121 439.5 331 72.5
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 5.6e-120 434.9 322 73.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.0e-117 426.4 330 73.9
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 4.5e-117 425.2 329 69.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.3e-113 413.7 329 71.7
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.0e-113 412.5 330 67.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.1e-110 404.1 329 66.3
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-110 403.7 324 66.4
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.1e-110 402.5 329 69.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.0e-109 399.8 329 69.0
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.0e-109 399.8 330 64.8
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.0e-109 399.8 329 71.4
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.5e-107 392.9 329 69.3
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 5.5e-107 391.7 329 69.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.6e-106 390.2 334 65.3
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-106 390.2 332 64.5
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.3e-104 382.1 323 63.5
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.3e-103 380.6 330 63.0
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-103 379.8 323 63.2
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.1e-103 379.8 323 63.2
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.3e-103 378.3 324 64.5
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 4.1e-102 375.6 329 65.3
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.2e-100 369.8 330 65.8
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.0e-97 360.9 329 65.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.1e-97 358.6 324 61.1
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.3e-95 354.0 331 65.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.3e-95 354.0 330 58.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.3e-95 354.0 336 61.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.8e-95 352.1 324 61.4
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 4.8e-95 352.1 336 60.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.0e-93 346.7 382 54.7
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-93 346.7 339 64.3
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.0e-93 346.7 330 57.9
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.6e-93 346.3 329 59.0
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 3.4e-93 345.9 330 57.0
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.4e-93 345.9 329 61.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.3e-92 344.0 330 62.1
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.7e-92 343.6 331 64.0
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 4.6e-90 335.5 330 59.7
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.9e-90 334.7 331 65.0
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 7.9e-90 334.7 331 60.4
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.0e-89 334.3 329 60.5
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.4e-89 334.0 332 57.8
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-89 334.0 330 63.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.3e-89 333.2 334 57.8
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.8e-89 331.3 330 58.2
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.5e-88 330.5 337 61.4
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.5e-88 330.5 330 54.8
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 7.4e-88 328.2 331 55.3
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 7.4e-88 328.2 319 62.7
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 9.7e-88 327.8 331 60.7
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 6.3e-87 325.1 329 55.6
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.1e-86 324.3 331 53.8
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.8e-86 323.6 330 60.6
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-86 323.6 330 55.5
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 3.4e-85 319.3 337 62.0
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.4e-85 319.3 403 50.9
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 4.5e-85 318.9 329 55.3
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.7e-84 317.0 331 56.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.2e-84 316.6 329 54.7
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 5.0e-84 315.5 319 57.7
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.9e-83 313.5 330 55.5
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.9e-83 313.5 327 57.8
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.2e-83 312.8 389 48.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.2e-83 312.4 331 61.3
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.2e-83 312.4 331 61.3
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.6e-82 309.3 285 66.0
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.6e-82 309.3 289 65.4
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 6.1e-82 308.5 325 60.3
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 3.9e-81 305.8 329 58.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.1e-81 305.4 330 59.7
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.7e-81 305.1 330 60.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.6e-80 303.1 330 60.0
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.4e-80 302.4 329 58.1
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.4e-78 296.6 329 53.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 9.1e-78 294.7 389 46.8
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.9e-77 292.0 308 56.8
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.2e-76 290.0 330 52.4
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 5.0e-76 288.9 330 54.5
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 6.5e-76 288.5 387 53.2
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 4.7e-74 282.3 324 52.2
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 6.1e-74 282.0 326 51.8
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 8.0e-74 281.6 323 57.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.4e-73 280.8 329 55.0
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.8e-73 280.4 323 53.9
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.0e-73 279.6 330 50.0
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-71 272.7 334 55.4
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 8.2e-71 271.6 325 51.7
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.9e-67 260.4 327 51.7
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 2.5e-67 260.0 328 50.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 5.5e-67 258.8 323 51.7
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.7e-66 256.5 264 53.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.7e-66 256.5 338 48.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 6.1e-66 255.4 315 48.3
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.0e-65 254.6 268 54.9
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.0e-65 254.6 370 44.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 6.8e-65 251.9 324 52.8
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.6e-64 250.0 326 47.5
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 5.7e-64 248.8 347 47.8
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.3e-63 247.7 276 50.7
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 4.8e-63 245.7 363 43.0
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 8.3e-63 245.0 363 43.0
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 9.1e-62 241.5 326 51.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 9.1e-62 241.5 265 58.1
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.5e-61 239.2 379 42.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.0e-60 238.0 302 50.7
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.2e-59 232.6 311 51.8
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 9.5e-59 231.5 264 56.8
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 6.1e-58 228.8 275 49.8
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 8.0e-58 228.4 331 51.1
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 8.0e-58 228.4 302 50.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-57 227.6 331 51.1
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.8e-57 227.3 308 47.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 5.2e-57 225.7 195 61.5
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 8.8e-57 224.9 330 49.4
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.5e-56 224.2 307 52.1
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.3e-55 221.1 302 50.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 4.9e-55 219.2 360 47.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 8.3e-55 218.4 302 50.7
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-54 218.0 363 41.3
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 7.0e-54 215.3 330 45.2
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-53 214.2 301 45.5
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.0e-53 213.8 329 44.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.0e-53 213.8 329 44.1
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-52 211.1 297 49.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.9e-52 209.9 313 49.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.0e-52 209.1 387 38.2
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 7.3e-51 205.3 310 49.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.6e-50 204.1 304 42.1
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.3e-44 184.5 176 61.4
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 5.6e-43 179.1 299 41.5
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.6e-43 179.1 210 48.1
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 8.9e-41 171.8 175 54.9
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.0e-40 170.6 278 42.4
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-39 167.9 149 66.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.7e-39 166.4 148 61.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 6.4e-39 165.6 249 48.2
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 6.4e-39 165.6 263 49.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-38 163.3 371 32.3
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.1e-38 162.9 327 35.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.9e-35 154.1 150 56.0
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 6.2e-34 149.1 105 75.2
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 6.2e-34 149.1 224 42.4
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-33 147.5 159 55.3
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-32 144.1 134 63.4
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.8e-32 141.7 154 51.3
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.8e-32 141.7 154 51.3
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-31 139.8 135 62.2
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.3e-31 138.7 175 49.1
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 3.2e-30 136.7 154 45.5
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.6e-29 134.4 290 37.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.8e-29 132.1 291 36.1
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.0e-28 131.7 137 50.4
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-28 131.7 195 46.2
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.5e-27 127.9 377 28.6
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.9e-27 127.5 308 34.4
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-26 124.0 125 55.2
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 4.9e-23 112.8 264 33.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.2e-21 108.2 145 51.0
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.1e-19 101.7 272 33.5
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 3.3e-19 100.1 84 67.9
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.8e-18 97.1 96 53.1
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-17 93.6 95 56.8
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.9e-17 92.0 48 89.6
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 8.9e-17 92.0 326 29.4
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 9.9e-16 88.6 122 43.4
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 6.4e-15 85.9 125 40.0
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 6.4e-15 85.9 125 40.0
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-14 84.0 219 33.3
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 2.4e-14 84.0 219 33.3
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 3.9e-12 76.6 204 31.9
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.6e-11 72.8 226 30.5
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-09 67.8 91 51.6
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 3.1e-09 67.0 53 62.3
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.3e-07 61.6 100 50.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-07 60.8 63 54.0
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.4e-06 58.2 85 41.2
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.1e-06 55.8 34 76.5


User provided reference genes

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