Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 2.9e-148 528.5 260 100.0
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 8.1e-122 440.7 260 81.9
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 4.0e-113 411.8 256 76.2
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 5.2e-113 411.4 256 75.4
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 1.3e-111 406.8 260 75.8
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 2.2e-111 406.0 258 75.6
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.9e-110 402.9 261 75.5
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.2e-109 400.2 262 72.5
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 2.1e-109 399.4 256 76.2
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 2.1e-109 399.4 260 74.6
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 1.0e-108 397.1 258 72.9
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 2.3e-108 396.0 258 73.3
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 5.1e-108 394.8 260 75.0
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 1.1e-107 393.7 282 68.4
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 1.6e-106 389.8 260 72.7
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 1.6e-106 389.8 243 75.7
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 2.1e-106 389.4 255 73.3
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 8.1e-106 387.5 260 72.3
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 5.8e-104 381.3 259 74.1
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 7.6e-104 380.9 265 69.8
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 9.9e-104 380.6 260 74.2
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 3.8e-103 378.6 263 70.3
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 8.4e-103 377.5 260 70.4
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 1.1e-102 377.1 263 70.3
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 1.9e-102 376.3 265 70.2
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 1.9e-102 376.3 263 69.6
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 3.2e-102 375.6 260 71.5
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 4.2e-102 375.2 256 71.9
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 7.1e-102 374.4 260 71.2
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 7.1e-102 374.4 263 70.3
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 7.1e-102 374.4 257 71.2
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 7.1e-102 374.4 263 69.6
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 9.3e-102 374.0 262 69.8
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.2e-101 373.6 255 73.7
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 1.2e-101 373.6 248 73.0
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 1.6e-101 373.2 263 69.6
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 2.1e-101 372.9 260 72.7
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.1e-101 372.9 263 70.3
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 2.7e-101 372.5 255 73.3
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 6.0e-101 371.3 255 72.9
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 6.0e-101 371.3 251 70.9
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 7.8e-101 370.9 262 69.8
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 1.3e-100 370.2 265 67.2
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 3.9e-100 368.6 286 64.7
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 3.9e-100 368.6 246 72.0
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 3.9e-100 368.6 260 69.6
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 1.5e-99 366.7 265 66.4
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 1.9e-99 366.3 268 67.2
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 2.5e-99 365.9 265 68.3
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 2.5e-99 365.9 260 70.0
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 3.3e-99 365.5 256 68.4
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 5.6e-99 364.8 258 68.2
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 9.6e-99 364.0 247 70.9
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.3e-98 363.6 254 68.9
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 6.2e-98 361.3 260 66.5
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 6.2e-98 361.3 242 71.5
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 1.1e-97 360.5 254 70.5
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 1.4e-97 360.1 258 67.4
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 2.4e-97 359.4 250 68.4
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 1.2e-96 357.1 244 69.7
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 1.5e-96 356.7 244 69.7
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 1.5e-96 356.7 244 69.7
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.0e-96 356.3 247 72.5
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 5.8e-96 354.8 244 69.7
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 1.7e-95 353.2 244 69.3
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 2.2e-95 352.8 256 67.6
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.9e-95 352.4 250 67.2
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.8e-95 352.1 258 68.2
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 3.8e-95 352.1 257 67.7
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 6.4e-95 351.3 244 68.9
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.1e-94 350.5 239 72.8
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 2.4e-94 349.4 246 69.1
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 4.2e-94 348.6 244 68.0
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 4.2e-94 348.6 245 69.4
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 4.2e-94 348.6 264 65.2
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 4.2e-94 348.6 251 67.3
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 7.1e-94 347.8 244 69.7
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.2e-93 347.1 246 68.3
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 3.5e-93 345.5 259 65.6
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 3.5e-93 345.5 269 66.5
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 4.6e-93 345.1 256 66.4
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.3e-92 343.6 267 64.8
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 5.1e-92 341.7 260 66.9
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 8.7e-92 340.9 243 66.7
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 8.7e-92 340.9 242 67.4
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 2.5e-91 339.3 253 66.0
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 3.3e-91 339.0 259 67.2
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 3.3e-91 339.0 242 66.9
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 3.7e-90 335.5 255 65.9
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 1.2e-85 320.5 253 61.7
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 1.2e-85 320.5 246 62.6
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 3.9e-84 315.5 286 58.0
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 5.1e-84 315.1 250 62.8
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 1.1e-81 307.4 255 58.4
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 1.8e-81 306.6 239 62.8
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.4e-80 302.4 223 67.7
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 4.5e-80 302.0 172 83.7
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 2.2e-79 299.7 286 52.8
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 5.5e-78 295.0 247 59.9
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 1.2e-77 293.9 228 62.7
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 6.0e-77 291.6 232 62.5
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.9e-75 286.6 233 61.4
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 2.4e-73 279.6 261 55.2
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 5.0e-71 271.9 274 51.1
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 3.3e-67 259.2 255 52.2
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.8e-66 256.1 172 72.1
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 6.3e-66 255.0 207 59.4
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 3.4e-64 249.2 172 70.3
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 1.3e-63 247.3 172 68.6
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 2.9e-63 246.1 176 67.6
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.6e-61 239.2 152 75.7
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 6.1e-61 238.4 172 66.9
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 2.8e-58 229.6 245 46.1
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 8.8e-52 208.0 172 61.6
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 7.4e-51 204.9 249 45.0
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 2.2e-47 193.4 674 26.6
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.8e-47 192.6 142 67.6
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 5.5e-46 188.7 142 69.0
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 1.2e-45 187.6 207 44.4
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 4.7e-45 185.7 142 68.3
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 1.7e-42 177.2 191 49.7
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 4.8e-42 175.6 132 67.4
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 1.6e-37 160.6 150 54.0
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 2.3e-36 156.8 109 67.0
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.2e-32 144.4 95 70.5
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 2.8e-29 133.3 107 60.7
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 4.0e-28 129.4 86 70.9
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 4.4e-27 125.9 92 67.4
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 4.4e-27 125.9 92 67.4
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 6.3e-26 122.1 92 64.1
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 1.4e-25 120.9 91 68.1
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 7.0e-25 118.6 140 43.6
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 3.8e-23 112.8 89 61.8
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.5e-22 110.9 258 34.1
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 3.5e-16 89.7 244 29.5
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 1.1e-12 78.2 76 52.6
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.0e-12 76.3 76 52.6
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.0e-12 76.3 76 52.6


User provided reference genes

Program Settings