Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.0e-301 1037.7 515 100.0
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 6.4e-179 631.3 520 65.0
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.5e-159 566.2 577 57.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 8.4e-147 524.6 513 54.2
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 7.9e-145 518.1 516 52.9
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-143 514.2 525 53.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 4.3e-143 512.3 517 53.0
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.9e-139 498.8 516 53.1
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 9.6e-135 484.6 535 51.2
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.8e-132 475.3 514 50.0
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.6e-129 467.2 512 50.0
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.8e-120 437.2 545 46.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.5e-119 434.1 506 47.6
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.8e-118 429.9 515 47.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.4e-117 427.6 519 46.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.5e-116 424.1 519 46.4
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.5e-116 422.5 505 46.9
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.5e-116 422.5 529 46.1
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.9e-116 422.2 496 47.6
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.2e-115 420.2 506 46.8
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 5.5e-114 415.6 488 46.3
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 9.4e-114 414.8 501 45.7
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.6e-113 412.9 505 45.9
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.5e-111 407.5 375 57.6
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.3e-111 406.4 512 45.3
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 4.4e-111 406.0 506 46.6
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.4e-111 405.2 514 45.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.3e-110 402.1 514 46.1
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.3e-110 402.1 499 46.3
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.4e-109 401.0 510 46.7
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-105 387.9 379 55.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-105 387.1 527 43.3
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 5.7e-103 379.0 502 43.6
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 2.2e-102 377.1 497 45.7
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 6.3e-102 375.6 497 43.7
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 4.1e-101 372.9 535 41.1
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.7e-97 360.1 572 39.3
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 4.7e-97 359.4 522 40.0
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.0e-95 354.0 524 41.4
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-93 348.2 507 40.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.4e-93 347.8 547 38.4
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.0e-91 341.7 475 41.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 3.8e-91 339.7 510 40.2
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-90 337.4 377 48.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.5e-90 337.0 510 40.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 3.6e-89 333.2 531 39.7
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.3e-88 330.5 500 41.2
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.3e-86 324.7 443 44.0
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.7e-86 324.3 524 38.4
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 4.8e-86 322.8 526 39.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.2e-84 318.2 525 39.2
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 2.0e-84 317.4 501 39.1
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 3.5e-84 316.6 523 37.5
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 5.9e-84 315.8 516 39.7
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.7e-84 315.5 519 38.7
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.7e-83 314.3 465 41.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 6.6e-83 312.4 525 36.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.5e-82 311.2 517 36.0
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.5e-82 310.5 507 38.5
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.5e-82 310.5 507 38.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.5e-82 310.5 536 36.4
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.5e-82 310.5 536 36.4
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.5e-82 310.5 514 37.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.7e-81 306.2 544 36.4
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.3e-80 303.9 512 37.5
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.2e-80 302.8 529 37.2
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.0e-79 300.8 517 37.5
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.7e-78 296.6 537 37.2
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.0e-75 288.5 533 35.5
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 5.0e-75 286.2 537 35.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 8.6e-75 285.4 521 35.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.1e-74 285.0 529 34.4
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.1e-74 285.0 480 38.8
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.5e-74 284.6 525 34.9
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.5e-74 284.6 524 33.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 4.3e-74 283.1 436 38.1
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.2e-73 281.6 529 35.2
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.8e-73 280.4 509 36.0
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 4.7e-73 279.6 513 35.9
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 8.0e-73 278.9 530 34.5
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.4e-72 278.1 498 34.1
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 3.1e-72 276.9 523 35.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 8.9e-72 275.4 498 36.7
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.0e-71 274.2 491 36.3
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 2.6e-71 273.9 512 33.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 3.4e-71 273.5 510 35.5
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 5.8e-71 272.7 525 36.2
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.5e-71 272.3 438 37.4
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 9.8e-71 271.9 509 35.8
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.4e-70 269.2 520 36.3
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 6.4e-70 269.2 506 36.0
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.1e-69 268.5 438 37.7
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.9e-69 267.7 432 38.0
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.4e-69 267.3 503 34.4
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 3.5e-68 263.5 414 37.0
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 4.6e-68 263.1 512 36.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.7e-67 261.2 491 33.6
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 3.0e-67 260.4 524 35.7
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 3.9e-67 260.0 522 31.4
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 6.6e-67 259.2 514 35.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 8.6e-67 258.8 393 39.2
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.5e-66 258.1 464 35.3
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 3.3e-66 256.9 523 35.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 7.3e-66 255.8 504 32.5
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 9.5e-66 255.4 480 37.7
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.1e-65 254.2 522 34.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.1e-64 251.9 518 33.8
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 5.2e-64 249.6 518 33.6
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.6e-63 247.3 534 32.8
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.7e-62 244.6 522 31.4
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.2e-62 244.2 520 32.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.7e-62 243.4 522 31.2
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 6.4e-62 242.7 516 32.6
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.4e-62 242.7 529 31.0
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.1e-61 241.9 396 36.1
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.1e-61 240.0 261 51.7
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.2e-60 238.4 527 32.1
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.3e-59 235.0 521 32.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.9e-58 231.1 530 30.6
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.5e-58 230.7 530 30.2
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 4.3e-58 229.9 517 32.5
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 9.5e-58 228.8 522 31.6
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.1e-57 227.6 418 34.7
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 3.6e-57 226.9 488 33.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.1e-56 225.3 270 48.1
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 5.2e-56 223.0 403 35.5
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.5e-55 221.5 473 31.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 5.8e-55 219.5 514 33.5
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.6e-55 219.2 403 35.5
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 7.6e-55 219.2 523 31.5
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.9e-53 214.5 520 29.6
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 4.1e-53 213.4 522 28.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.9e-50 204.5 506 30.6
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 9.6e-50 202.2 513 30.6
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.1e-49 199.1 404 32.9
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.4e-48 198.4 411 33.3
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.6e-47 192.6 528 29.7
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.2e-45 187.2 385 33.0
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 4.2e-45 186.8 522 31.6
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 9.6e-42 175.6 262 39.3
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.1e-40 172.2 228 43.0
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.8e-40 171.4 345 33.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.4e-40 171.0 445 28.8
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.4e-39 166.8 266 39.5
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 7.6e-39 166.0 282 35.1
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-38 164.5 269 36.4
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 6.4e-38 162.9 354 31.6
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-37 162.2 266 36.5
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.1e-37 162.2 266 35.0
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.9e-37 161.4 251 37.8
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.0e-35 155.6 266 34.6
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.3e-35 155.2 245 38.4
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 5.1e-35 153.3 248 38.7
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 2.8e-33 147.5 270 36.7
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 2.8e-33 147.5 285 35.4
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.4e-32 145.2 299 34.4
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 2.2e-30 137.9 243 35.0
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.9e-29 134.8 274 31.4
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 2.1e-25 121.3 259 31.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 7.6e-23 112.8 272 33.5
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 3.8e-22 110.5 167 40.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 8.4e-22 109.4 235 33.2
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 7.9e-20 102.8 257 31.9
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 2.8e-17 94.4 140 35.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.1e-16 92.4 248 28.6
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 5.8e-15 86.7 115 39.1
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.0e-14 85.9 131 37.4
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 1.7e-14 85.1 156 35.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 1.1e-13 82.4 156 35.3
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.8e-11 75.1 248 27.0
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.4e-08 65.5 132 31.8
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.1e-08 64.3 105 38.1
BcaB06g29645 Brassica carinata HOM05D003538 ORTHO05D018603 5.0e-06 57.0 67 40.3


User provided reference genes

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