Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.5e-127 459.5 231 100.0
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 5.4e-77 291.6 240 64.6
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 4.7e-65 251.9 232 56.5
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 5.8e-63 245.0 233 58.4
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 2.9e-62 242.7 238 58.4
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 4.1e-61 238.8 234 58.5
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 3.5e-60 235.7 241 57.3
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.3e-59 233.0 233 52.4
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 6.6e-59 231.5 236 55.1
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 2.5e-58 229.6 228 55.7
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 7.3e-58 228.0 228 55.3
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 9.5e-58 227.6 225 54.7
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 1.1e-53 214.2 249 48.6
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 4.1e-53 212.2 237 51.5
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 5.4e-53 211.8 248 47.2
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 9.2e-53 211.1 234 50.4
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 1.0e-51 207.6 249 47.8
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 1.7e-51 206.8 172 61.0
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 3.9e-51 205.7 241 46.1
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 8.6e-51 204.5 230 50.9
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 1.1e-50 204.1 231 50.6
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 5.6e-50 201.8 249 44.6
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 9.5e-50 201.1 252 46.8
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 1.8e-48 196.8 279 41.2
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 8.9e-48 194.5 245 46.5
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.2e-47 194.1 199 52.8
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.0e-47 193.4 230 50.0
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 6.4e-46 188.3 230 47.8
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 5.4e-45 185.3 230 47.4
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 2.1e-44 183.3 214 47.7
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 6.0e-44 181.8 235 44.7
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 3.0e-43 179.5 188 48.4
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 5.1e-43 178.7 235 45.1
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 8.7e-43 177.9 217 47.0
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 1.1e-42 177.6 243 43.2
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 1.1e-40 171.0 235 43.8
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 1.1e-40 171.0 237 41.4
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 2.4e-40 169.9 240 44.2
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.2e-39 167.5 238 42.4
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 5.8e-39 165.2 210 46.2
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 7.6e-39 164.9 230 45.7
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.3e-38 164.1 241 41.5
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 8.4e-38 161.4 223 47.1
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.1e-37 161.0 239 41.8
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.9e-37 160.2 236 42.8
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 7.1e-37 158.3 174 55.2
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 9.3e-37 157.9 242 39.3
Haze_17513 Corylus avellana HOM05D000187 ORTHO05D000926 9.3e-37 157.9 219 47.5
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.7e-36 156.4 236 42.4
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 1.0e-35 154.5 239 41.8
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 5.1e-35 152.1 238 40.8
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 6.6e-35 151.8 239 41.8
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 1.1e-34 151.0 203 45.8
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 9.6e-34 147.9 226 42.5
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 3.6e-33 146.0 229 41.0
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 4.8e-33 145.6 221 39.8
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 2.6e-31 139.8 214 41.1
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 1.4e-29 134.0 231 38.5
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.2e-28 131.0 221 41.6
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 2.7e-28 129.8 235 37.9
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 2.3e-27 126.7 170 47.6
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 1.5e-26 124.0 234 37.2
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 7.4e-26 121.7 205 38.5
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 1.1e-24 117.9 189 40.2
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 3.1e-24 116.3 221 33.9
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 4.0e-24 115.9 240 36.7
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 9.0e-24 114.8 149 44.3
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 2.6e-23 113.2 179 38.5
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.6e-23 113.2 240 37.5
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.4e-23 112.8 184 39.7
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 5.8e-23 112.1 143 43.4
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 1.3e-22 110.9 132 44.7
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 4.9e-22 109.0 148 41.9
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 8.4e-22 108.2 181 35.9
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.4e-21 107.5 178 38.2
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.4e-21 107.5 149 41.6
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.4e-21 107.5 149 41.6
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.2e-21 106.3 121 44.6
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 4.2e-21 105.9 166 34.9
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 4.2e-21 105.9 179 39.1
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 5.5e-21 105.5 149 40.9
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 5.5e-21 105.5 203 33.5
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 7.1e-21 105.1 195 37.4
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 9.3e-21 104.8 157 37.6
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 1.6e-20 104.0 121 46.3
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 2.7e-20 103.2 156 39.1
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 6.0e-20 102.1 138 42.8
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 6.0e-20 102.1 175 37.7
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 7.9e-20 101.7 183 39.9
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 1.0e-19 101.3 199 36.7
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.0e-19 101.3 242 35.5
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 1.3e-19 100.9 167 42.5
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 2.3e-19 100.1 175 38.9
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 8.7e-19 98.2 205 36.1
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.9e-18 97.1 226 33.6
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.5e-18 96.7 121 42.1
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 4.3e-18 95.9 169 33.7
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.3e-17 94.4 235 32.8
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 1.6e-17 94.0 235 33.2
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.8e-17 93.2 235 32.3
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 3.7e-17 92.8 230 31.7
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 6.2e-17 92.0 234 29.9
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 8.2e-17 91.7 228 32.9
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 1.4e-16 90.9 173 35.8
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.4e-16 90.9 173 35.8
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 1.8e-16 90.5 179 39.7
Cfa018567 Carpinus fangiana HOM05D000187 ORTHO05D000926 3.1e-16 89.7 85 62.4
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 9.0e-16 88.2 182 34.6
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 4.9e-14 82.4 179 33.0
Lsat_1_v5_gn_8_150021 Lactuca sativa HOM05D041600 ORTHO05D006468 1.1e-13 81.3 163 41.1
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 1.1e-13 81.3 64 56.2
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 1.9e-13 80.5 184 29.9
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 3.2e-13 79.7 164 30.5
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.2e-12 77.8 186 31.2
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.2e-12 77.8 149 33.6
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 1.2e-12 77.8 149 33.6
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 1.2e-12 77.8 149 33.6
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 1.2e-12 77.8 121 33.9
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 2.1e-12 77.0 185 29.2
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 2.7e-12 76.6 185 30.3
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 4.6e-12 75.9 147 32.0
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 6.0e-12 75.5 101 35.6
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 1.8e-11 73.9 192 28.1
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 2.3e-11 73.6 163 36.2
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 1.1e-10 71.2 130 37.7
Medtr3g088090 Medicago truncatula HOM05D005772 ORTHO05D006468 9.7e-10 68.2 113 40.7
Nitab4.5_0003012g0080 Nicotiana tabacum HOM05D005772 ORTHO05D006468 9.7e-10 68.2 48 64.6
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 1.6e-09 67.4 172 35.5
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 1.6e-09 67.4 190 28.9
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 8.2e-09 65.1 262 27.9
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 1.8e-08 63.9 221 26.7


User provided reference genes

Program Settings