Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 3.0e-65 252.7 253 100.0
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 4.7e-34 149.1 128 62.5
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.2e-32 144.4 128 58.6
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.9e-31 139.8 105 62.9
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 8.6e-28 128.3 97 61.9
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 8.9e-25 118.2 117 55.6
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.5e-24 117.5 122 46.7
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.6e-24 116.7 127 55.9
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.3e-23 114.4 127 47.2
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 6.4e-23 112.1 108 53.7
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.4e-23 112.1 108 53.7
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 8.3e-23 111.7 122 48.4
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.3e-23 111.7 129 49.6
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 1.9e-22 110.5 123 47.2
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.9e-22 110.5 102 53.9
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.4e-22 110.2 129 54.3
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.2e-22 109.8 125 53.6
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 2.1e-21 107.1 116 53.4
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 2.7e-21 106.7 127 48.0
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 2.7e-21 106.7 86 60.5
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.5e-21 106.3 102 52.0
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 3.5e-21 106.3 118 56.8
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 3.9e-20 102.8 126 42.9
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 3.9e-20 102.8 129 48.1
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.5e-19 100.9 85 60.0
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.5e-19 100.9 108 50.0
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 1.9e-19 100.5 122 50.0
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.9e-19 100.5 107 49.5
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 4.3e-19 99.4 118 48.3
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 4.3e-19 99.4 103 50.5
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 5.6e-19 99.0 129 47.3
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.6e-19 99.0 101 50.5
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 5.6e-19 99.0 93 61.3
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 7.3e-19 98.6 120 45.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 9.5e-19 98.2 131 51.9
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 9.5e-19 98.2 126 45.2
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 9.5e-19 98.2 130 54.6
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 9.5e-19 98.2 125 46.4
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 9.5e-19 98.2 129 48.8
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 1.2e-18 97.8 90 55.6
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.6e-18 97.4 85 60.0
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 2.1e-18 97.1 109 48.6
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.8e-18 96.7 102 43.1
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 4.7e-18 95.9 136 41.2
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 6.2e-18 95.5 97 42.3
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 6.2e-18 95.5 117 46.2
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 6.2e-18 95.5 117 46.2
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 6.2e-18 95.5 124 40.3
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 8.1e-18 95.1 129 41.1
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.1e-17 94.7 91 44.0
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 1.4e-17 94.4 110 50.9
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.4e-17 94.4 110 47.3
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 2.4e-17 93.6 101 41.6
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 2.4e-17 93.6 101 41.6
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 2.4e-17 93.6 110 50.9
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 4.0e-17 92.8 101 49.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 6.8e-17 92.0 126 50.8
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 6.8e-17 92.0 78 56.4
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 8.9e-17 91.7 91 45.1
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 1.5e-16 90.9 112 48.2
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.0e-16 90.5 109 48.6
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.4e-16 89.7 86 55.8
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 4.4e-16 89.4 91 42.9
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 5.8e-16 89.0 92 45.7
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 9.9e-16 88.2 91 42.9
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 9.9e-16 88.2 133 42.1
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.7e-15 87.4 106 45.3
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.2e-15 87.0 92 55.4
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 4.9e-15 85.9 88 50.0
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.9e-15 85.9 92 46.7
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 4.9e-15 85.9 74 56.8
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 6.4e-15 85.5 127 44.1
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 6.4e-15 85.5 92 45.7
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 6.4e-15 85.5 109 46.8
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.9e-14 84.0 51 74.5
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 1.9e-14 84.0 94 42.6
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.9e-14 84.0 88 50.0
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 2.4e-14 83.6 116 44.8
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 2.4e-14 83.6 73 63.0
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 4.1e-14 82.8 91 40.7
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 5.4e-14 82.4 73 54.8
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 7.1e-14 82.0 88 51.1
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 7.1e-14 82.0 122 44.3
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 7.1e-14 82.0 86 51.2
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 7.1e-14 82.0 106 46.2
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 9.2e-14 81.6 116 39.7
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 1.2e-13 81.3 108 50.9
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.6e-13 80.9 86 50.0
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.1e-13 80.5 128 40.6
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 4.6e-13 79.3 69 50.7
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 4.6e-13 79.3 104 41.3
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 6.0e-13 79.0 113 47.8
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 7.8e-13 78.6 114 49.1
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 7.8e-13 78.6 102 38.2
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.7e-12 77.4 139 43.9
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.0e-12 76.6 99 39.4
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 3.0e-12 76.6 88 40.9
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 3.0e-12 76.6 103 53.4
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.9e-12 76.3 84 46.4
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 8.7e-12 75.1 91 38.5
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 1.1e-11 74.7 87 47.1
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.9e-11 73.9 114 42.1
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.9e-11 73.9 88 44.3
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.9e-11 73.9 102 46.1
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 2.5e-11 73.6 86 39.5
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 3.3e-11 73.2 124 44.4
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 4.3e-11 72.8 74 56.8
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 1.2e-10 71.2 74 40.5
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.2e-10 71.2 101 38.6
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 1.2e-10 71.2 87 43.7
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.2e-10 71.2 89 42.7
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.2e-10 71.2 112 43.8
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.6e-10 70.9 83 48.2
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.8e-10 70.1 88 38.6
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 2.8e-10 70.1 87 42.5
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 2.8e-10 70.1 85 43.5
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.6e-10 69.7 88 39.8
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 3.6e-10 69.7 88 40.9
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 6.2e-10 68.9 77 44.2
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.4e-09 67.8 83 42.2
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 1.8e-09 67.4 89 40.4
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 1.8e-09 67.4 77 41.6
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 2.4e-09 67.0 76 43.4
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.4e-09 67.0 118 37.3
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 6.9e-09 65.5 118 38.1
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 2.0e-08 63.9 96 39.6
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.6e-08 63.5 94 38.3
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 2.6e-08 63.5 57 45.6
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 4.4e-08 62.8 91 45.1
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.4e-08 62.8 59 47.5
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 7.6e-08 62.0 75 41.3
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 9.9e-08 61.6 62 51.6
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 9.9e-08 61.6 78 42.3
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.7e-07 60.8 95 38.9
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.2e-07 60.5 100 36.0
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 2.9e-07 60.1 111 36.0
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.8e-07 59.7 95 40.0
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 3.8e-07 59.7 75 42.7
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 4.9e-07 59.3 53 43.4
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.9e-07 59.3 95 38.9
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 6.4e-07 58.9 64 46.9
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 6.4e-07 58.9 84 36.9
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 6.4e-07 58.9 112 41.1
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 8.4e-07 58.5 67 46.3
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.4e-06 57.8 97 33.0
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.9e-06 57.4 98 36.7
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.2e-06 56.6 102 35.3
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 4.2e-06 56.2 39 61.5
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 4.2e-06 56.2 39 59.0
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 4.2e-06 56.2 88 36.4
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 5.4e-06 55.8 120 39.2
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 9.3e-06 55.1 84 33.3
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 9.3e-06 55.1 85 42.4


User provided reference genes

Program Settings