Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 5.3e-110 401.0 193 100.0
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 1.2e-90 336.7 214 77.1
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 4.6e-90 334.7 210 77.1
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 2.5e-88 328.9 214 74.8
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 9.6e-88 327.0 215 74.4
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.6e-87 326.2 214 74.8
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 2.8e-87 325.5 211 76.3
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 2.4e-86 322.4 209 75.1
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 5.3e-86 321.2 217 73.3
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 9.0e-86 320.5 218 73.4
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 2.0e-85 319.3 213 72.3
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 1.3e-84 316.6 214 72.9
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 2.2e-84 315.8 210 74.3
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 2.9e-84 315.5 214 71.0
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 4.9e-84 314.7 207 73.9
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 6.5e-84 314.3 211 72.5
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 6.5e-84 314.3 210 72.9
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.4e-83 313.2 196 77.6
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 1.4e-83 313.2 210 72.4
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 3.2e-83 312.0 214 71.0
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 3.2e-83 312.0 212 72.6
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 7.1e-83 310.8 211 71.6
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 9.3e-83 310.5 211 72.5
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 3.5e-82 308.5 212 72.2
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 7.9e-82 307.4 211 71.6
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 1.0e-81 307.0 212 71.7
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 1.0e-81 307.0 212 71.7
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 1.0e-81 307.0 198 75.3
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 2.3e-81 305.8 200 74.0
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 3.0e-81 305.4 195 74.4
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 3.0e-81 305.4 211 72.0
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 3.9e-81 305.1 195 74.4
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 8.7e-81 303.9 199 73.4
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 1.9e-80 302.8 196 74.5
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 2.5e-80 302.4 211 69.2
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 2.5e-80 302.4 198 74.2
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 4.3e-80 301.6 196 75.0
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 5.7e-80 301.2 195 72.8
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 1.3e-79 300.1 195 75.4
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 1.3e-79 300.1 197 72.6
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 2.2e-79 299.3 199 72.9
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 2.2e-79 299.3 196 74.0
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 2.8e-79 298.9 211 69.7
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 3.7e-79 298.5 194 73.2
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 8.2e-79 297.4 196 73.0
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 8.2e-79 297.4 245 62.9
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 1.1e-78 297.0 197 73.1
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 1.1e-78 297.0 211 70.1
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 1.4e-78 296.6 197 73.6
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 1.4e-78 296.6 196 73.5
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 1.4e-78 296.6 197 72.6
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 1.4e-78 296.6 191 74.3
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 1.8e-78 296.2 197 73.1
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 2.4e-78 295.8 200 72.0
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 2.4e-78 295.8 197 72.6
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 2.4e-78 295.8 195 72.8
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 3.1e-78 295.4 197 73.1
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 6.9e-78 294.3 194 73.7
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 6.9e-78 294.3 197 72.6
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 9.0e-78 293.9 213 67.6
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 1.2e-77 293.5 196 74.0
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 2.6e-77 292.4 195 72.3
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 2.6e-77 292.4 200 73.0
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 1.0e-76 290.4 194 72.2
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 2.2e-76 289.3 200 70.0
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 2.9e-76 288.9 197 72.1
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 5.0e-76 288.1 194 71.6
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 8.5e-76 287.3 195 72.3
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 8.5e-76 287.3 200 70.0
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 1.4e-75 286.6 193 73.1
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 4.2e-75 285.0 200 69.5
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 7.2e-75 284.3 196 70.9
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 7.2e-75 284.3 193 72.0
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 2.3e-73 279.3 215 66.0
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 1.7e-71 273.1 208 65.4
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 2.2e-71 272.7 186 72.0
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 2.2e-71 272.7 196 66.8
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 1.4e-70 270.0 224 62.5
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 2.4e-70 269.2 209 68.4
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 1.7e-68 263.1 183 69.9
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 5.5e-67 258.1 191 66.5
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 9.4e-67 257.3 178 70.8
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 6.1e-66 254.6 190 64.2
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 6.7e-65 251.1 191 66.5
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 1.1e-64 250.4 191 63.9
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 4.8e-63 245.0 197 64.0
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 9.1e-62 240.7 192 59.9
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 2.6e-61 239.2 184 65.2
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 2.9e-60 235.7 184 65.2
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 2.7e-58 229.2 175 60.6
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 6.1e-58 228.0 169 68.6
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.4e-57 226.9 200 59.0
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 1.1e-56 223.8 183 59.6
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 2.6e-56 222.6 202 58.4
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 7.0e-54 214.5 199 56.8
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 6.5e-52 208.0 115 82.6
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 8.0e-50 201.1 148 65.5
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 6.8e-49 198.0 207 52.2
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 8.5e-44 181.0 171 52.6
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 3.2e-43 179.1 115 73.0
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 1.6e-42 176.8 203 49.3
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 7.5e-40 167.9 193 45.6
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 7.5e-40 167.9 105 77.1
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 1.6e-37 160.2 137 60.6
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 8.0e-34 147.9 81 82.7
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 4.4e-32 142.1 200 44.0
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 9.2e-30 134.4 149 45.0
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 9.8e-24 114.4 142 45.8
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 9.8e-24 114.4 80 67.5
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 1.3e-15 87.4 55 76.4
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 4.1e-14 82.4 59 66.1


User provided reference genes

Program Settings