Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G015500 Carya illinoinensis HOM05D000005 ORTHO05D010574 1.3e-182 642.9 311 100.0
QL04p027112 Quercus lobata HOM05D000005 ORTHO05D010574 4.9e-49 199.1 242 45.9
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 8.3e-49 198.4 281 42.0
Haze_17731 Corylus avellana HOM05D000005 ORTHO05D010574 2.3e-46 190.3 263 45.2
QL04p027735 Quercus lobata HOM05D000005 ORTHO05D000012 7.3e-45 185.3 244 44.7
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-42 177.6 244 43.4
QL04p028099 Quercus lobata HOM05D000005 ORTHO05D010574 1.5e-42 177.6 247 44.1
QL04p026662 Quercus lobata HOM05D000005 ORTHO05D000012 3.7e-41 172.9 246 43.1
QL04p027378 Quercus lobata HOM05D000005 ORTHO05D000012 1.9e-40 170.6 246 42.7
QL04p027649 Quercus lobata HOM05D000005 ORTHO05D010574 6.6e-38 162.2 230 43.0
QL04p027557 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-36 157.9 250 41.6
Cfa018270 Carpinus fangiana HOM05D000005 ORTHO05D010574 6.0e-31 139.0 222 41.0
CiPaw.16G076500 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.6e-28 131.0 78 82.1
QL04p027147 Quercus lobata HOM05D002442 ORTHO05D002670 2.0e-26 124.0 241 36.5
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 6.4e-25 119.0 204 39.7
CiPaw.16G015100 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.8e-19 100.9 95 60.0
QL09p004704 Quercus lobata HOM05D000005 ORTHO05D000012 4.5e-18 96.3 237 32.1
QL09p004537 Quercus lobata HOM05D000529 ORTHO05D010574 1.3e-17 94.7 164 38.4
QL05p082177 Quercus lobata HOM05D000005 ORTHO05D000012 3.8e-17 93.2 226 32.3
FvH4_5g38760 Fragaria vesca HOM05D000005 ORTHO05D012870 9.3e-16 88.6 285 28.8
CANSAT01G0874 Cannabis sativa HOM05D000005 ORTHO05D000012 2.7e-15 87.0 232 28.0
ClCG08G000610 Citrullus lanatus HOM05D000005 ORTHO05D014598 1.0e-14 85.1 284 25.7
QL11p023247 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-14 84.3 279 31.5
RcHm_v2.0_Chr7g0240641 Rosa chinensis HOM05D000005 ORTHO05D012870 5.1e-14 82.8 262 26.7
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.5e-13 81.3 208 29.3
QL04p027190 Quercus lobata HOM05D000005 ORTHO05D013009 1.9e-13 80.9 314 26.4
Sed0026450 Sechium edule HOM05D000005 ORTHO05D014598 2.5e-13 80.5 245 26.9
RcHm_v2.0_Chr6g0272741 Rosa chinensis HOM05D000005 ORTHO05D000012 3.3e-13 80.1 238 30.3
QL09p003378 Quercus lobata HOM05D000529 ORTHO05D000472 4.3e-13 79.7 180 33.3
CiPaw.16G016000 Carya illinoinensis HOM05D000005 ORTHO05D010574 7.4e-13 79.0 59 55.9
FvH4_5g38561 Fragaria vesca HOM05D000005 ORTHO05D000012 7.4e-13 79.0 245 30.2
Gorai.007G346900 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.6e-13 78.6 257 27.2
Eucgr.F01325 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.3e-12 78.2 225 28.4
FAN13G2383 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.3e-12 78.2 274 27.7
ClCG08G001380 Citrullus lanatus HOM05D000005 ORTHO05D014598 2.1e-12 77.4 247 25.9
ClCG08G001340 Citrullus lanatus HOM05D000005 ORTHO05D014598 4.8e-12 76.3 247 25.5
Eucgr.F01288 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.2e-12 75.9 252 26.6
FAN04G2194 Fragaria x ananassa HOM05D000005 ORTHO05D012870 8.1e-12 75.5 256 28.9
MELO3C025516.2 Cucumis melo HOM05D000005 ORTHO05D014598 1.1e-11 75.1 245 24.9
QL04p027300 Quercus lobata HOM05D000005 ORTHO05D010574 1.1e-11 75.1 88 46.6
Prupe.8G005600 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-11 74.3 279 26.5
Eucgr.F01323 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.4e-11 73.9 252 27.0
FAN04G0619 Fragaria x ananassa HOM05D000005 ORTHO05D001748 4.0e-11 73.2 234 28.2
QL03p063704 Quercus lobata HOM05D000005 ORTHO05D010574 4.0e-11 73.2 148 31.1
MELO3C022148.2 Cucumis melo HOM05D000005 ORTHO05D014598 5.3e-11 72.8 239 25.9
FvH4_5g38540 Fragaria vesca HOM05D000005 ORTHO05D012870 5.3e-11 72.8 257 26.1
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 5.3e-11 72.8 249 28.1
QL05p082212 Quercus lobata HOM05D000005 ORTHO05D010574 6.9e-11 72.4 142 30.3
FAN06G4743 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.2e-10 71.6 143 28.7
Prupe.8G005500 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-10 71.6 299 26.8
QL04p027745 Quercus lobata HOM05D000005 ORTHO05D010574 1.5e-10 71.2 169 30.8
MD07G1123900 Malus domestica HOM05D000005 ORTHO05D000012 2.0e-10 70.9 260 25.8
Haze_17828 Corylus avellana HOM05D000005 ORTHO05D010574 2.6e-10 70.5 149 32.9
FvH4_5g38500 Fragaria vesca HOM05D000005 ORTHO05D012870 2.6e-10 70.5 137 32.8
FAN18G3744 Fragaria x ananassa HOM05D000005 ORTHO05D012870 2.6e-10 70.5 137 32.8
Prupe.2G059000 Prunus persica HOM05D000005 ORTHO05D000012 2.6e-10 70.5 254 28.0
Cfa018268 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.4e-10 70.1 147 32.0
CsaV3_5G039730 Cucumis sativus L. HOM05D000005 ORTHO05D014598 3.4e-10 70.1 251 26.3
QL09p004551 Quercus lobata HOM05D000005 ORTHO05D000012 5.8e-10 69.3 154 33.8
Haze_17813 Corylus avellana HOM05D000005 ORTHO05D010574 7.6e-10 68.9 252 26.6
RcHm_v2.0_Chr1g0342551 Rosa chinensis HOM05D000005 ORTHO05D010574 7.6e-10 68.9 143 30.8
Haze_17818 Corylus avellana HOM05D000005 ORTHO05D010574 1.0e-09 68.6 149 30.9
Gohir.A11G301600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.0e-09 68.6 255 26.3
QL09p003267 Quercus lobata HOM05D000005 ORTHO05D010574 1.3e-09 68.2 188 27.1
FAN18G3157 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-09 67.8 260 24.2
CANSAT78G1585 Cannabis sativa HOM05D000005 ORTHO05D000012 2.2e-09 67.4 232 25.4
Gohir.D11G315614 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.9e-09 67.0 264 27.3
RcHm_v2.0_Chr3g0465111 Rosa chinensis HOM05D000005 ORTHO05D001748 3.8e-09 66.6 243 28.0
Gohir.D11G317000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.5e-09 65.9 257 25.7
Cfa011656 Carpinus fangiana HOM05D000005 ORTHO05D010574 8.4e-09 65.5 171 28.1
ClCG08G001350 Citrullus lanatus HOM05D000005 ORTHO05D014598 8.4e-09 65.5 242 26.4
MD17G1192900 Malus domestica HOM05D000005 ORTHO05D000012 8.4e-09 65.5 164 27.4
FAN04G2291 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-08 64.7 266 28.6
QL04p027198 Quercus lobata HOM05D000005 ORTHO05D010574 1.4e-08 64.7 154 28.6
CiPaw.16G016100 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.9e-08 64.3 78 47.4
Prupe.8G046500 Prunus persica HOM05D000005 ORTHO05D000012 1.9e-08 64.3 235 30.6
Eucgr.F01291 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.5e-08 63.9 225 27.6
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 3.2e-08 63.5 158 30.4
RcHm_v2.0_Chr6g0251641 Rosa chinensis HOM05D000005 ORTHO05D000012 3.2e-08 63.5 150 28.0
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-08 63.2 141 29.1
RcHm_v2.0_Chr1g0317981 Rosa chinensis HOM05D000005 ORTHO05D010574 5.5e-08 62.8 123 37.4
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 5.5e-08 62.8 255 26.7
QL09p003562 Quercus lobata HOM05D000005 ORTHO05D000012 7.1e-08 62.4 244 25.8
MD05G1002200 Malus domestica HOM05D000005 ORTHO05D010574 9.3e-08 62.0 143 29.4
QL09p003516 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-07 61.6 251 26.3
QL09p003532 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-07 61.6 251 25.9
QL03p063806 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-07 61.2 145 30.3
Gohir.D11G316401 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.1e-07 60.8 120 34.2
RcHm_v2.0_Chr6g0251631 Rosa chinensis HOM05D000005 ORTHO05D012233 2.7e-07 60.5 147 27.9
FvH4_5g38680 Fragaria vesca HOM05D000005 ORTHO05D000012 3.5e-07 60.1 256 27.3
Manes.01G120200 Manihot esculenta HOM05D000005 ORTHO05D000012 3.5e-07 60.1 246 26.0
RcHm_v2.0_Chr1g0319431 Rosa chinensis HOM05D000005 ORTHO05D001748 3.5e-07 60.1 265 25.7
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 3.5e-07 60.1 255 25.5
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 3.5e-07 60.1 255 25.9
Gohir.D11G315366 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.6e-07 59.7 121 35.5
QL04p027395 Quercus lobata HOM05D000083 ORTHO05D001732 4.6e-07 59.7 205 26.3
Sed0009572 Sechium edule HOM05D000005 ORTHO05D014598 4.6e-07 59.7 240 25.4
Haze_17819 Corylus avellana HOM05D000005 ORTHO05D010574 6.0e-07 59.3 148 28.4
MELO3C022152.2 Cucumis melo HOM05D000005 ORTHO05D014598 6.0e-07 59.3 258 23.3
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 6.0e-07 59.3 259 25.9
FAN04G1101 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.9e-07 58.9 265 25.3
FAN24G3397 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.9e-07 58.9 255 27.1
QL03p060940 Quercus lobata HOM05D000005 ORTHO05D000012 7.9e-07 58.9 278 24.8
FAN26G1463 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.0e-06 58.5 232 25.9
Gohir.D11G316300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.0e-06 58.5 250 27.2
FvH4_1g16650 Fragaria vesca HOM05D000005 ORTHO05D012233 1.3e-06 58.2 231 26.4
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.3e-06 58.2 232 25.9
FAN26G2122 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.3e-06 58.2 232 25.9
Gohir.D11G315500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-06 58.2 123 32.5
Gohir.D11G315785 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.8e-06 57.8 256 25.8
Prupe.8G005100 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-06 57.8 242 26.9
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-06 57.8 195 27.7
FvH4_5g38600 Fragaria vesca HOM05D000005 ORTHO05D012870 2.3e-06 57.4 257 24.9
Gohir.A11G285360 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.3e-06 57.4 161 29.8
Gohir.D11G315671 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.3e-06 57.4 121 34.7
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 2.3e-06 57.4 133 32.3
RcHm_v2.0_Chr6g0250931 Rosa chinensis HOM05D000005 ORTHO05D000012 2.3e-06 57.4 261 25.3
FvH4_2g02050 Fragaria vesca HOM05D000005 ORTHO05D000012 3.0e-06 57.0 176 26.7
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.0e-06 57.0 232 26.7
QL03p060869 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-06 57.0 247 25.1
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-06 57.0 256 26.2
QL03p068834 Quercus lobata HOM05D000005 ORTHO05D010574 3.9e-06 56.6 141 29.8
CsaV3_5G039740 Cucumis sativus L. HOM05D000005 ORTHO05D014598 5.1e-06 56.2 250 23.6
RcHm_v2.0_Chr1g0322961 Rosa chinensis HOM05D000005 ORTHO05D000012 5.1e-06 56.2 258 25.6
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 6.7e-06 55.8 257 25.7


User provided reference genes

Program Settings