Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G011700 Carya illinoinensis HOM05D001336 ORTHO05D034236 1.6e-42 175.6 85 100.0
CiPaw.16G011800 Carya illinoinensis HOM05D000092 ORTHO05D000042 1.8e-14 82.4 68 64.7
CiPaw.15G015400 Carya illinoinensis HOM05D001336 ORTHO05D001211 1.5e-13 79.3 82 50.0
Dinv25873 Davidia involucrata HOM05D001336 ORTHO05D001211 2.6e-13 78.6 50 74.0
FAN27G1886 Fragaria x ananassa HOM05D001336 ORTHO05D001211 2.2e-12 75.5 66 56.1
Gohir.D05G245000 Gossypium hirsutum HOM05D001336 ORTHO05D001211 2.2e-12 75.5 65 58.5
Gorai.009G254800 Gossypium raimondii HOM05D001336 ORTHO05D001211 2.2e-12 75.5 65 58.5
Potri.002G067100 Populus trichocarpa HOM05D001336 ORTHO05D001211 2.2e-12 75.5 50 70.0
Sabra02G0053200 Salix brachista HOM05D001336 ORTHO05D001211 2.2e-12 75.5 50 70.0
FvH4_2g13560 Fragaria vesca HOM05D001336 ORTHO05D001211 2.9e-12 75.1 66 56.1
FAN24G0876 Fragaria x ananassa HOM05D001336 ORTHO05D001211 2.9e-12 75.1 66 56.1
Gohir.A05G244000 Gossypium hirsutum HOM05D001336 ORTHO05D001211 2.9e-12 75.1 65 58.5
GSVIVG01034544001 Vitis vinifera HOM05D001336 ORTHO05D001211 3.8e-12 74.7 50 70.0
CSS0039304 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 5.0e-12 74.3 66 54.5
COL.COLO4_29848 Corchorus olitorius HOM05D001336 ORTHO05D001211 5.0e-12 74.3 66 53.0
Sabra05G0147600 Salix brachista HOM05D001336 ORTHO05D001211 6.5e-12 73.9 50 68.0
FAN15G2668 Fragaria x ananassa HOM05D001336 ORTHO05D001211 8.5e-12 73.6 65 56.9
CiPaw.16G011300 Carya illinoinensis HOM05D001336 ORTHO05D034236 2.5e-11 72.0 39 82.1
Ciclev10000559m.g Citrus clementina HOM05D001336 ORTHO05D001211 4.2e-11 71.2 65 53.8
TWI34G1494 Tripterygium wilfordii HOM05D001336 ORTHO05D001211 5.5e-11 70.9 50 66.0
Potri.005G193100 Populus trichocarpa HOM05D001336 ORTHO05D001211 9.4e-11 70.1 50 64.0
Cpa.g.sc21.209 Carica papaya HOM05D001336 ORTHO05D001211 2.1e-10 68.9 65 49.2
Nn5g28761 Nelumbo nucifera HOM05D001336 ORTHO05D001211 2.1e-10 68.9 50 64.0
RcHm_v2.0_Chr6g0275171 Rosa chinensis HOM05D001336 ORTHO05D001211 2.1e-10 68.9 66 51.5
TAR381G0385 Trochodendron aralioides HOM05D001336 ORTHO05D001211 3.6e-10 68.2 50 62.0
Phvul.007G080800 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 4.6e-10 67.8 66 51.5
CANSAT25G1624 Cannabis sativa HOM05D001336 ORTHO05D001211 6.1e-10 67.4 65 46.2
Cc10_g14450 Coffea canephora HOM05D001336 ORTHO05D001211 6.1e-10 67.4 50 64.0
Manes.18G092800 Manihot esculenta HOM05D001336 ORTHO05D001211 1.0e-09 66.6 51 66.7
Prupe.8G032700 Prunus persica HOM05D001336 ORTHO05D001211 1.0e-09 66.6 48 60.4
Actinidia04760 Actinidia chinensis HOM05D001336 ORTHO05D001211 1.4e-09 66.2 50 58.0
Nitab4.5_0002497g0010 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.4e-09 66.2 63 54.0
PGR042G0120 Punica granatum HOM05D001336 ORTHO05D001211 2.3e-09 65.5 65 47.7
VMungo0720G3164 Vigna mungo HOM05D001336 ORTHO05D001211 2.3e-09 65.5 66 48.5
MSTRG.1090 Avicennia marina HOM05D001336 ORTHO05D001211 3.0e-09 65.1 50 60.0
MBI09_g38855_MAGBIO Magnolia biondii HOM05D001336 ORTHO05D001211 3.0e-09 65.1 50 60.0
MD05G1027200 Malus domestica HOM05D001336 ORTHO05D001211 3.0e-09 65.1 64 48.4
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 3.9e-09 64.7 34 82.4
Phvul.004G093900 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 3.9e-09 64.7 50 60.0
AL1G51660 Arabidopsis lyrata HOM05D001336 ORTHO05D001211 6.7e-09 63.9 53 60.4
AT1G43620 Arabidopsis thaliana HOM05D001336 ORTHO05D001211 6.7e-09 63.9 53 60.4
Lj2g0005253 Lotus japonicus HOM05D001336 ORTHO05D001211 6.7e-09 63.9 65 46.2
Glyma.10G224000 Glycine max HOM05D001336 ORTHO05D001211 8.8e-09 63.5 66 48.5
Carub.0001s3461 Capsella rubella HOM05D001336 ORTHO05D001211 1.5e-08 62.8 69 49.3
Glyma.02G081000 Glycine max HOM05D001336 ORTHO05D001211 1.5e-08 62.8 50 58.0
Lj5g0024627 Lotus japonicus HOM05D001336 ORTHO05D001211 1.5e-08 62.8 66 45.5
Aqoxy5G02066 Aquilegia oxysepala HOM05D001336 ORTHO05D001211 1.9e-08 62.4 66 43.9
Lj7A375T59 Lonicera japonica HOM05D001336 ORTHO05D001211 2.5e-08 62.0 50 54.0
Nitab4.5_0001062g0110 Nicotiana tabacum HOM05D001336 ORTHO05D001211 2.5e-08 62.0 63 52.4
CAN.G1215.2 Capsicum annuum HOM05D001336 ORTHO05D001211 3.3e-08 61.6 63 50.8
Thhalv10005442m.g Eutrema salsugineum HOM05D001336 ORTHO05D001211 3.3e-08 61.6 69 46.4
TPR.G22159 Trifolium pratense HOM05D001336 ORTHO05D001211 3.3e-08 61.6 82 37.8
Oeu051273.1 Olea europaea HOM05D001336 ORTHO05D001211 4.3e-08 61.2 50 58.0
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 4.3e-08 61.2 50 54.0
Thecc.08G153900 Theobroma cacao HOM05D001336 ORTHO05D001211 4.3e-08 61.2 65 47.7
Ca_10679_v3 Cicer arietinum L. HOM05D001336 ORTHO05D001211 5.7e-08 60.8 66 45.5
Oeu002060.1 Olea europaea HOM05D001336 ORTHO05D034236 7.4e-08 60.5 50 58.0
PGSC0003DMG400024097 Solanum tuberosum HOM05D001336 ORTHO05D001211 7.4e-08 60.5 64 51.6
arahy.Tifrunner.gnm1.ann1.7NV4RJ Arachis hypogaea HOM05D001336 ORTHO05D001211 9.7e-08 60.1 65 49.2
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 1.3e-07 59.7 51 58.8
arahy.Tifrunner.gnm1.ann1.GJL8UB Arachis hypogaea HOM05D001336 ORTHO05D001211 1.3e-07 59.7 51 58.8
BcaB07g33980 Brassica carinata HOM05D001336 ORTHO05D001211 1.7e-07 59.3 69 46.4
BcaC08g42815 Brassica carinata HOM05D001336 ORTHO05D001211 1.7e-07 59.3 69 46.4
C06p00270 Brassica napus HOM05D001336 ORTHO05D001211 1.7e-07 59.3 69 46.4
Migut.C00988 Erythranthe guttata HOM05D001336 ORTHO05D001211 1.7e-07 59.3 51 56.9
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 1.7e-07 59.3 50 54.0
Sp1g32510 Schrenkiella parvula HOM05D001336 ORTHO05D001211 1.7e-07 59.3 69 46.4
THA.LOC104803035 Tarenaya hassleriana HOM05D001336 ORTHO05D001211 1.7e-07 59.3 70 42.9
CARHR035650 Cardamine hirsuta HOM05D001336 ORTHO05D001211 2.2e-07 58.9 69 44.9
Oeu046043.1 Olea europaea HOM05D001336 ORTHO05D001211 2.2e-07 58.9 50 52.0
Solyc04g071540.4 Solanum lycopersicum HOM05D001336 ORTHO05D001211 2.2e-07 58.9 66 51.5
Sopen04g027520 Solanum pennellii HOM05D001336 ORTHO05D001211 2.2e-07 58.9 66 51.5
A10p07800 Brassica napus HOM05D001336 ORTHO05D001211 2.8e-07 58.5 69 46.4
BraSC36t46022Z Brassica rapa HOM05D001336 ORTHO05D001211 2.8e-07 58.5 69 46.4
Lalb_Chr21g0305511 Lupinus albus HOM05D001336 ORTHO05D001211 2.8e-07 58.5 51 60.8
MD10G1026500 Malus domestica HOM05D001336 ORTHO05D001211 2.8e-07 58.5 49 55.1
Medtr1g098640 Medicago truncatula HOM05D001336 ORTHO05D001211 2.8e-07 58.5 66 45.5
Peaxi162Scf00599g00218 Petunia axillaris HOM05D001336 ORTHO05D001211 2.8e-07 58.5 50 54.0
Aa31LG6G9890 Aethionema arabicum HOM05D001336 ORTHO05D001211 3.7e-07 58.2 60 43.3
Psat6g200840 Pisum sativum HOM05D001336 ORTHO05D001211 3.7e-07 58.2 52 53.8
ATR0820G028 Amborella trichopoda HOM05D001336 ORTHO05D000153 4.8e-07 57.8 63 49.2
Migut.N03210 Erythranthe guttata HOM05D001336 ORTHO05D001211 4.8e-07 57.8 50 50.0
arahy.Tifrunner.gnm1.ann1.X8HV17 Arachis hypogaea HOM05D001336 ORTHO05D001211 6.3e-07 57.4 50 58.0
AUR62026689 Chenopodium quinoa HOM05D001336 ORTHO05D001211 6.3e-07 57.4 52 53.8
ECA246G4709 Erigeron canadensis HOM05D001336 ORTHO05D001211 6.3e-07 57.4 69 44.9
AUR62013593 Chenopodium quinoa HOM05D001336 ORTHO05D001211 8.2e-07 57.0 69 42.0
Glyma.20G167900 Glycine max HOM05D001336 ORTHO05D001211 8.2e-07 57.0 69 44.9
AUR62026696 Chenopodium quinoa HOM05D001336 ORTHO05D001211 1.1e-06 56.6 65 43.1
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.4e-06 56.2 32 75.0
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.4e-06 56.2 32 75.0
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 1.4e-06 56.2 32 75.0
DCAR_014435 Daucus carota HOM05D001336 ORTHO05D001211 1.8e-06 55.8 53 54.7
DCAR_014437 Daucus carota HOM05D001336 ORTHO05D001211 1.8e-06 55.8 53 54.7
Eucgr.F02699 Eucalyptus grandis HOM05D001336 ORTHO05D001211 1.8e-06 55.8 48 52.1
HPP92_001990 Vanilla planifolia HOM05D001336 ORTHO05D001211 1.8e-06 55.8 65 40.0
Ah.05g167910 Amaranthus hybridus HOM05D001336 ORTHO05D001211 3.1e-06 55.1 70 37.1
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 3.1e-06 55.1 31 74.2
MELO3C008339.2 Cucumis melo HOM05D001336 ORTHO05D001211 3.1e-06 55.1 63 42.9
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 3.1e-06 55.1 49 53.1
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 3.1e-06 55.1 32 71.9
SalBow7G1553 Salvia bowleyana HOM05D001336 ORTHO05D001211 3.1e-06 55.1 52 53.8
SalBow7G2140 Salvia bowleyana HOM05D001336 ORTHO05D001211 3.1e-06 55.1 52 53.8
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 4.1e-06 54.7 52 51.9
Hund17440 Selenicereus undatus HOM05D001336 ORTHO05D001211 4.1e-06 54.7 48 54.2
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 4.1e-06 54.7 31 71.0
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 4.1e-06 54.7 32 71.9
EL10Ac1g01557 Beta vulgaris HOM05D001336 ORTHO05D001211 5.3e-06 54.3 50 50.0
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 6.9e-06 53.9 34 70.6
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 6.9e-06 53.9 31 71.0
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 6.9e-06 53.9 31 71.0
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 6.9e-06 53.9 34 70.6
CsaV3_6G005200 Cucumis sativus L. HOM05D001336 ORTHO05D001211 9.1e-06 53.5 50 50.0


User provided reference genes

Program Settings