Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 0.0e+00 3834.3 2009 100.0
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 0.0e+00 1268.1 2215 42.9
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 0.0e+00 1201.4 2216 41.8
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 1.2e-66 260.4 1693 27.0
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.1e-48 200.7 873 29.7
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 3.2e-48 199.1 1389 25.5
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 4.3e-45 188.7 1153 26.9
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 5.0e-38 165.2 1159 25.6
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 8.6e-38 164.5 1317 25.5
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 1.7e-30 140.2 599 28.5
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 5.1e-30 138.7 534 29.4
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 4.7e-28 132.1 578 31.3
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 2.4e-27 129.8 974 24.9
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 4.0e-27 129.0 605 30.2
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 9.9e-26 124.4 382 32.7
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.6e-23 117.1 291 36.4
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 2.1e-23 116.7 637 28.1
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 3.0e-22 112.8 529 27.0
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 3.0e-22 112.8 894 24.5
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.3e-21 109.0 464 29.1
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 1.2e-20 107.5 489 28.6
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.6e-20 107.1 280 35.0
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.6e-20 105.9 285 35.1
Dinv41064 Davidia involucrata HOM05D016043 ORTHO05D015789 1.8e-19 103.6 1173 24.6
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 3.1e-19 102.8 191 44.0
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 5.2e-19 102.1 864 25.0
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 6.9e-19 101.7 564 27.7
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 2.6e-18 99.8 277 33.2
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.6e-18 99.8 277 33.2
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 4.9e-17 95.5 224 35.7
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 8.4e-17 94.7 146 42.5
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.4e-16 94.0 386 28.5
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 2.4e-16 93.2 457 27.8
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 3.2e-16 92.8 86 55.8
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 3.2e-16 92.8 1153 22.6
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 5.4e-16 92.0 491 26.3
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 7.1e-16 91.7 427 26.9
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 9.3e-16 91.3 326 31.9
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 9.3e-16 91.3 392 29.1
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 1.2e-15 90.9 90 54.4
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 6.0e-15 88.6 147 37.4
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 1.7e-14 87.0 172 34.3
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 6.6e-14 85.1 195 38.5
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 8.7e-14 84.7 195 38.5
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 1.1e-13 84.3 739 24.4
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 2.5e-13 83.2 157 40.8
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 5.6e-13 82.0 309 28.5
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 4.8e-12 79.0 1317 23.5
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 8.1e-12 78.2 505 25.7
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 1.8e-11 77.0 90 45.6
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 3.1e-11 76.3 178 38.8
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 6.9e-11 75.1 176 32.4
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 3.4e-10 72.8 489 25.2
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 7.6e-10 71.6 266 29.3
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 2.2e-09 70.1 45 62.2
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 2.9e-09 69.7 223 31.8
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 3.8e-09 69.3 138 34.8
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 3.8e-09 69.3 702 23.9
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 1.9e-08 67.0 52 57.7
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 2.4e-08 66.6 156 35.9
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 3.2e-08 66.2 83 44.6
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 4.2e-08 65.9 180 33.9
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 5.4e-08 65.5 101 42.6
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 7.1e-08 65.1 86 41.9
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 7.1e-08 65.1 86 41.9
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 9.3e-08 64.7 78 44.9
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 2.1e-07 63.5 779 22.2
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 2.7e-07 63.2 236 31.8
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 3.5e-07 62.8 51 54.9
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 6.0e-07 62.0 87 41.4
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 6.0e-07 62.0 87 41.4
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 6.0e-07 62.0 264 29.2
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 7.9e-07 61.6 435 24.8
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 1.3e-06 60.8 49 57.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.8e-06 60.5 115 35.7
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 5.1e-06 58.9 130 31.5
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 8.7e-06 58.2 52 57.7


User provided reference genes

Program Settings