Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 7.8e-109 397.1 198 100.0
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 4.9e-87 324.7 198 80.8
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 4.2e-86 321.6 198 79.8
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 2.1e-77 292.7 187 72.7
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 6.2e-74 281.2 194 71.1
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 7.6e-72 274.2 196 68.4
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.3e-71 273.5 198 68.2
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.2e-71 272.7 194 69.1
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 6.4e-71 271.2 198 66.7
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.4e-71 271.2 187 67.9
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 8.4e-71 270.8 198 66.7
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 2.4e-70 269.2 196 64.3
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 7.1e-70 267.7 200 66.0
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 7.1e-70 267.7 196 65.3
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 6.0e-69 264.6 200 65.0
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 1.0e-68 263.8 190 70.0
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.3e-68 263.5 194 66.5
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 1.3e-68 263.5 198 66.2
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 3.0e-68 262.3 179 70.4
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 3.9e-68 261.9 192 65.1
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.9e-68 261.9 187 67.9
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 8.7e-68 260.8 191 66.0
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 8.7e-68 260.8 188 69.7
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.1e-67 260.4 185 69.2
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 7.4e-67 257.7 179 70.9
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 9.6e-67 257.3 184 69.0
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 1.3e-66 256.9 184 66.8
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 1.6e-66 256.5 193 64.2
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.6e-66 256.5 190 65.8
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 2.1e-66 256.1 192 63.5
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 2.1e-66 256.1 184 66.8
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.7e-66 255.4 186 66.1
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 4.8e-66 255.0 198 64.1
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 6.2e-66 254.6 197 66.5
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 6.2e-66 254.6 198 64.1
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 6.2e-66 254.6 192 64.6
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 8.1e-66 254.2 162 72.2
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 8.1e-66 254.2 185 65.4
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.1e-65 253.8 190 61.6
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.1e-65 253.8 187 67.4
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.1e-65 253.8 186 66.1
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 3.1e-65 252.3 195 63.6
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 3.1e-65 252.3 193 62.7
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 4.0e-65 251.9 183 68.9
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 5.3e-65 251.5 200 63.0
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.2e-64 250.4 194 63.4
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.2e-64 250.4 198 63.6
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.2e-64 250.4 194 62.9
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 1.5e-64 250.0 197 62.9
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.6e-64 249.2 183 67.2
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.6e-64 249.2 183 67.2
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 3.4e-64 248.8 160 74.4
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 3.4e-64 248.8 188 63.8
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 3.4e-64 248.8 186 65.1
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 5.8e-64 248.1 186 65.1
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 5.8e-64 248.1 195 62.6
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 7.6e-64 247.7 187 64.7
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.0e-63 247.3 186 64.5
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.7e-63 246.5 198 62.6
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.9e-63 245.7 202 59.9
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 2.9e-63 245.7 195 64.6
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 2.9e-63 245.7 188 63.8
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.9e-63 245.7 186 65.6
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 3.8e-63 245.4 198 63.1
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 6.5e-63 244.6 188 61.7
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 6.5e-63 244.6 189 63.5
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.5e-63 244.6 185 63.8
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.1e-62 243.8 183 66.1
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 1.1e-62 243.8 182 64.8
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 1.4e-62 243.4 191 63.4
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 1.4e-62 243.4 183 66.1
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.4e-62 243.4 195 62.1
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.9e-62 243.0 183 66.7
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 3.2e-62 242.3 183 65.6
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 4.2e-62 241.9 198 61.6
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 4.2e-62 241.9 198 61.6
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 1.6e-61 240.0 149 71.8
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 2.1e-61 239.6 198 62.1
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 3.5e-61 238.8 183 62.3
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 6.0e-61 238.0 194 59.3
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.8e-60 236.5 204 57.4
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 2.3e-60 236.1 183 65.6
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.3e-60 236.1 175 65.7
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 3.0e-60 235.7 198 59.6
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 3.0e-60 235.7 200 59.5
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 3.0e-60 235.7 189 59.8
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 3.9e-60 235.3 165 63.6
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 1.1e-59 233.8 181 60.8
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.9e-59 233.0 150 69.3
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 3.3e-59 232.3 150 68.0
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 9.6e-59 230.7 182 59.3
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.3e-58 230.3 169 61.5
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.3e-58 230.3 191 55.0
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.3e-58 230.3 155 68.4
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 6.3e-58 228.0 202 54.5
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.3e-58 228.0 186 59.1
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 8.2e-58 227.6 150 66.7
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.8e-57 226.5 185 60.5
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.2e-56 223.8 188 57.4
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.6e-56 222.6 199 56.8
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 2.2e-55 219.5 207 54.6
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.1e-54 217.2 182 58.2
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.4e-54 216.9 153 61.4
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 1.9e-54 216.5 178 60.1
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 6.7e-52 208.0 151 64.9
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.4e-49 199.5 156 59.0
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.7e-47 193.4 184 57.6
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 5.0e-47 191.8 195 51.8
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 3.6e-45 185.7 168 53.0
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 7.9e-45 184.5 172 51.7
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 5.1e-44 181.8 155 56.1
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 8.8e-44 181.0 160 61.2
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.3e-41 171.8 158 47.5
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.3e-41 171.8 158 47.5
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 1.0e-39 167.5 121 71.9
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 2.2e-39 166.4 129 64.3
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.1e-38 164.1 150 47.3
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.5e-35 153.7 120 66.7
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 2.8e-34 149.4 115 62.6
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 2.4e-33 146.4 133 59.4
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 4.1e-33 145.6 125 58.4
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.0e-31 141.0 125 59.2
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 9.4e-30 134.4 70 88.6
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 6.1e-29 131.7 157 40.8
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 8.5e-23 111.3 73 71.2
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.0e-20 104.4 75 57.3
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.3e-20 103.2 67 71.6
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 6.8e-20 101.7 71 64.8
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 2.6e-19 99.8 67 67.2
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 6.3e-18 95.1 75 66.7
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 6.3e-18 95.1 95 47.4
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 4.1e-17 92.4 145 33.1
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.2e-13 80.9 144 27.1
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 8.8e-12 74.7 45 73.3
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 3.4e-11 72.8 68 54.4


User provided reference genes

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