Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.4e-102 375.6 195 100.0
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 2.7e-82 308.9 196 84.2
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 6.8e-73 277.7 197 76.6
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.7e-71 271.9 197 73.6
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.4e-70 270.0 197 74.6
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 1.8e-70 269.6 197 73.6
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 3.1e-70 268.9 197 74.6
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 4.1e-70 268.5 197 73.6
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 7.0e-70 267.7 194 75.3
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.2e-69 266.9 197 74.1
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 5.9e-69 264.6 195 74.4
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 7.8e-69 264.2 197 75.6
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 7.8e-69 264.2 169 82.2
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 2.9e-68 262.3 198 72.2
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 1.9e-67 259.6 197 74.6
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.3e-67 258.5 194 73.7
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 7.3e-67 257.7 197 72.1
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 4.7e-66 255.0 195 71.3
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 6.1e-66 254.6 195 73.3
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 8.0e-66 254.2 197 74.1
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.0e-65 253.8 195 71.8
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.0e-65 253.8 196 71.4
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 2.3e-65 252.7 195 72.8
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 4.0e-65 251.9 196 73.0
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 4.0e-65 251.9 196 71.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 4.0e-65 251.9 176 76.7
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 8.9e-65 250.8 196 70.4
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.6e-64 249.2 196 70.4
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 2.6e-64 249.2 196 70.4
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 3.4e-64 248.8 188 72.3
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 4.4e-64 248.4 197 71.1
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.5e-64 247.7 196 72.4
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 7.5e-64 247.7 196 72.4
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 7.5e-64 247.7 197 71.1
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 9.8e-64 247.3 197 71.6
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 9.8e-64 247.3 196 72.4
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.3e-63 246.9 195 71.8
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.2e-63 246.1 198 70.2
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.2e-63 246.1 197 70.6
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 4.9e-63 245.0 196 70.9
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 6.4e-63 244.6 172 79.7
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.1e-62 243.8 162 82.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 1.4e-62 243.4 196 70.4
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.8e-62 243.0 194 70.1
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 4.1e-62 241.9 196 70.9
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 4.1e-62 241.9 193 72.5
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 7.0e-62 241.1 196 70.4
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.2e-61 240.4 188 72.9
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 2.7e-61 239.2 198 70.2
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 5.9e-61 238.0 191 72.3
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 7.8e-61 237.7 196 66.8
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.3e-60 236.9 196 69.4
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.7e-60 236.5 190 72.1
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.0e-60 235.7 196 67.9
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.6e-60 234.6 197 67.0
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.9e-59 233.0 199 67.8
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.9e-59 233.0 198 69.2
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 3.3e-59 232.3 140 87.1
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 3.3e-59 232.3 185 68.6
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 4.3e-59 231.9 196 65.3
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 7.3e-59 231.1 193 68.4
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 7.3e-59 231.1 188 69.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 9.5e-59 230.7 200 65.0
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 9.5e-59 230.7 200 68.5
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.2e-58 230.3 197 67.0
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.2e-58 230.3 199 67.3
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.6e-58 229.9 195 68.7
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.6e-58 229.9 195 66.2
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 2.1e-58 229.6 195 66.2
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 4.7e-58 228.4 186 69.4
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 6.2e-58 228.0 173 72.8
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.2e-58 228.0 197 67.5
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.1e-57 227.3 158 77.8
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.1e-57 227.3 185 68.6
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.1e-57 227.3 194 65.5
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.4e-57 226.9 197 65.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 2.3e-57 226.1 198 66.7
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.1e-57 225.7 200 64.5
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.0e-57 225.3 191 68.1
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 4.0e-57 225.3 161 77.6
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.0e-57 225.3 196 65.3
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 5.2e-57 224.9 189 68.3
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 6.8e-57 224.6 194 66.5
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 6.8e-57 224.6 140 84.3
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 8.9e-57 224.2 191 67.5
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.2e-56 223.8 196 66.3
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.5e-56 223.4 185 68.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 1.5e-56 223.4 171 70.8
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 1.5e-56 223.4 184 69.0
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.0e-56 223.0 173 72.3
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.0e-56 223.0 191 67.5
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.0e-56 223.0 196 65.3
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.6e-56 222.6 158 76.6
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.6e-56 222.6 196 65.3
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.4e-56 222.2 194 66.0
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.4e-56 222.2 142 82.4
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 3.4e-56 222.2 196 65.8
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 3.4e-56 222.2 195 65.6
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 5.8e-56 221.5 194 66.0
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 9.8e-56 220.7 189 68.3
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 9.8e-56 220.7 171 69.6
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 1.7e-55 219.9 165 73.9
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.2e-55 219.5 185 67.6
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.9e-55 219.2 140 83.6
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 3.7e-55 218.8 147 80.3
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.4e-55 218.0 195 66.7
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 8.3e-55 217.6 196 64.8
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.1e-54 217.2 138 83.3
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.1e-54 217.2 162 73.5
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.4e-54 216.9 142 82.4
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.4e-54 216.9 146 81.5
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.4e-54 216.9 146 81.5
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.4e-54 216.9 142 82.4
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.4e-54 216.9 196 64.3
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 1.9e-54 216.5 145 81.4
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.4e-54 216.1 131 84.7
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 2.4e-54 216.1 202 62.4
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 5.4e-54 214.9 140 81.4
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 7.0e-54 214.5 164 73.2
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.2e-53 213.8 176 72.7
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 2.7e-53 212.6 175 69.7
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 3.5e-53 212.2 140 80.7
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 4.6e-53 211.8 171 71.3
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.9e-51 206.5 142 79.6
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 4.3e-51 205.3 115 92.2
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 5.6e-51 204.9 141 78.0
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 9.5e-51 204.1 164 69.5
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 3.6e-50 202.2 198 63.6
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.4e-49 200.3 113 92.0
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.4e-49 200.3 194 59.8
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 5.2e-49 198.4 113 91.2
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 6.8e-49 198.0 115 89.6
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 6.8e-49 198.0 115 89.6
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.0e-48 196.4 113 89.4
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 7.5e-48 194.5 112 90.2
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.7e-47 193.4 176 63.6
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 6.0e-45 184.9 206 55.3
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.7e-44 183.3 112 86.6
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 5.1e-44 181.8 135 69.6
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 6.6e-44 181.4 138 68.8
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.3e-43 179.1 194 56.7
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.3e-43 179.1 138 68.1
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 4.3e-43 178.7 191 57.1
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.3e-43 177.9 194 56.2
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 9.5e-43 177.6 191 57.6
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 4.0e-41 172.2 166 62.0
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.0e-41 172.2 142 62.7
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 4.0e-41 172.2 107 79.4
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 3.4e-40 169.1 348 37.6
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 3.4e-40 169.1 140 68.6
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 9.9e-40 167.5 133 70.7
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 9.2e-38 161.0 113 73.5
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.2e-37 160.6 111 73.0
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.3e-36 156.4 138 63.8
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.1e-35 154.1 160 59.4
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.7e-29 132.9 128 62.5
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 3.5e-29 132.5 109 62.4
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 8.1e-26 121.3 79 81.0
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 3.4e-24 115.9 132 49.2
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 7.6e-24 114.8 91 70.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 6.4e-23 111.7 85 70.6
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.4e-22 110.5 86 73.3
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.2e-22 109.4 91 65.9
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 9.3e-22 107.8 86 72.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 9.3e-22 107.8 86 72.1
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.2e-16 90.9 83 57.8
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 4.2e-14 82.4 49 87.8
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 9.3e-14 81.3 63 68.3
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 6.0e-13 78.6 44 90.9
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 2.8e-10 69.7 57 68.4
Lalb_Chr12g0198741 Lupinus albus HOM05D004106 ORTHO05D004381 2.2e-07 60.1 82 42.7
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.9e-07 59.7 84 45.2
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 6.5e-07 58.5 108 42.6
AagrBONN_evm.TU.Sc2ySwM_362.2265 Anthoceros agrestis HOM05D010958 ORTHO05D004381 2.5e-06 56.6 110 40.9


User provided reference genes

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