Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.6e-183 646.0 325 100.0
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.4e-162 575.1 324 87.7
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 7.4e-157 557.4 332 84.0
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.0e-150 537.0 325 80.3
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.5e-149 533.1 327 82.0
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.9e-149 532.7 324 79.0
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 7.4e-149 530.8 324 78.4
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.3e-148 530.0 326 81.3
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.8e-148 528.9 326 77.3
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 4.8e-148 528.1 327 80.7
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 6.9e-147 524.2 321 76.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 5.9e-146 521.2 322 78.0
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 7.7e-146 520.8 321 76.3
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 2.2e-145 519.2 322 78.3
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 8.5e-145 517.3 327 78.6
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 8.5e-145 517.3 327 79.2
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.1e-144 516.9 319 78.7
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.9e-144 516.2 322 77.0
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 4.2e-144 515.0 320 77.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 9.4e-144 513.8 328 77.4
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 9.4e-144 513.8 322 77.0
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 7.9e-143 510.8 324 76.2
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.0e-142 508.8 328 75.9
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 6.7e-142 507.7 321 74.1
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 8.8e-142 507.3 325 75.4
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.1e-141 506.9 322 75.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.7e-141 503.8 321 72.6
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 9.7e-141 503.8 329 74.2
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.3e-140 503.4 326 75.8
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.7e-140 503.1 324 74.1
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 4.8e-140 501.5 325 74.2
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 4.8e-140 501.5 322 75.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.3e-140 501.1 321 72.3
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.8e-139 499.6 325 73.5
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.1e-139 498.4 326 75.5
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.1e-139 498.4 321 72.0
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 6.9e-139 497.7 328 75.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.9e-139 497.7 328 75.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.9e-139 497.7 328 74.7
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 9.1e-139 497.3 327 74.6
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.2e-138 496.9 327 73.1
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.2e-138 496.9 325 74.2
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.2e-138 496.9 322 75.8
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 3.4e-138 495.4 325 73.8
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.0e-137 493.8 318 72.6
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.9e-137 492.3 322 73.9
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 3.8e-137 491.9 327 72.5
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 5.0e-137 491.5 323 72.1
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 6.5e-137 491.1 327 73.4
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.4e-136 490.0 329 72.3
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.9e-136 489.6 329 72.6
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.5e-136 489.2 329 72.6
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 3.2e-136 488.8 322 72.0
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.2e-136 488.8 325 72.9
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 4.2e-136 488.4 321 72.3
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.5e-136 488.0 329 72.9
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 7.2e-136 487.6 318 73.9
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-135 486.9 322 71.7
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.2e-135 486.9 325 72.0
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.3e-134 482.6 318 70.8
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.7e-134 481.1 330 71.8
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.7e-134 481.1 322 73.6
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.5e-133 479.9 319 72.7
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.6e-133 479.2 369 66.1
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.3e-133 478.8 327 71.6
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.7e-133 478.0 327 71.9
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.2e-132 476.1 321 73.2
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.4e-131 473.4 323 72.4
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 4.1e-131 471.9 328 70.4
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 7.0e-131 471.1 327 72.5
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.2e-130 470.3 264 88.3
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.6e-130 469.9 321 69.5
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 4.5e-130 468.4 322 70.5
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.5e-128 463.4 321 68.8
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.5e-128 462.6 329 70.2
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.2e-128 462.2 321 67.9
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-127 460.3 307 70.0
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.7e-127 459.1 326 70.2
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 3.6e-127 458.8 322 68.6
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.8e-126 456.4 321 68.5
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.1e-125 453.8 325 68.3
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.7e-124 449.9 325 68.0
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 5.3e-123 444.9 277 78.7
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 7.0e-123 444.5 305 69.8
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.6e-122 443.4 320 67.5
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.6e-122 443.4 323 66.9
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.5e-122 442.2 325 65.8
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 3.5e-122 442.2 325 65.5
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.3e-121 440.3 325 65.5
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.5e-120 436.8 325 64.0
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.9e-120 436.4 318 67.0
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.9e-120 436.4 325 66.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 4.2e-120 435.3 325 64.6
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 9.4e-120 434.1 325 63.4
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.6e-119 433.3 325 63.7
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 6.1e-119 431.4 330 65.8
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 8.0e-119 431.0 323 63.5
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 8.0e-119 431.0 417 57.8
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 4.0e-118 428.7 323 63.5
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 5.2e-118 428.3 374 58.8
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.6e-117 426.0 325 63.7
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.2e-116 422.9 303 66.0
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 8.3e-116 421.0 324 63.3
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.4e-115 419.5 324 62.7
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 5.4e-115 418.3 323 62.8
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.2e-114 417.2 325 63.4
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 4.5e-114 415.2 324 62.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.5e-112 409.5 294 69.4
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.3e-110 402.9 288 67.0
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 3.4e-109 399.1 258 76.4
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 9.8e-109 397.5 322 64.3
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 8.3e-108 394.4 545 43.5
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.2e-107 391.0 321 60.7
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.7e-105 386.7 322 62.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.5e-104 383.6 287 65.5
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.9e-104 383.3 323 57.3
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-103 380.6 324 58.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.6e-101 372.9 683 36.7
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 8.6e-97 357.8 324 57.4
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 6.2e-95 351.7 282 62.8
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 4.0e-94 349.0 263 62.4
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.4e-91 339.7 308 53.6
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 3.2e-91 339.3 220 73.6
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 2.1e-87 326.6 230 70.0
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.7e-87 325.5 256 62.9
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.8e-86 323.6 310 49.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.2e-84 316.6 310 47.7
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.6e-82 310.5 202 75.7
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 2.3e-78 296.6 177 82.5
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.1e-75 287.7 306 48.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.8e-70 270.4 221 60.2
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.6e-58 230.7 303 38.9
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 3.3e-48 196.4 194 47.4
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.5e-40 170.2 96 87.5
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 2.0e-37 160.6 99 77.8
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.3e-33 147.9 99 74.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-32 144.1 93 71.0
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.3e-32 143.3 93 71.0
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.6e-31 141.0 86 80.2
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 7.2e-27 125.6 325 27.7
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 1.4e-25 121.3 117 55.6
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.8e-25 120.9 75 73.3
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.0e-21 107.5 88 61.4
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 7.9e-18 95.5 81 54.3
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.8e-15 87.0 66 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 1.7e-12 77.8 69 62.3
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 2.2e-12 77.4 54 74.1
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 2.2e-12 77.4 54 74.1
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 2.9e-12 77.0 54 74.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 5.5e-11 72.8 56 60.7
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.7e-08 62.0 43 67.4
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.1e-06 57.0 62 46.8


User provided reference genes

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