Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 9.8e-144 513.5 260 100.0
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.8e-137 492.7 260 96.2
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 3.4e-104 382.1 269 76.6
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 4.2e-102 375.2 250 75.2
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 6.4e-95 351.3 270 70.0
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 1.1e-94 350.5 252 71.8
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 7.9e-93 344.4 258 70.5
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 4.3e-91 338.6 253 68.8
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 4.3e-91 338.6 209 78.9
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 6.2e-90 334.7 210 78.1
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.4e-89 333.6 245 69.4
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.4e-89 333.6 245 69.8
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.4e-89 333.6 245 69.4
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 3.1e-89 332.4 242 71.9
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 5.3e-89 331.6 240 68.8
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 6.9e-89 331.3 234 72.6
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 6.9e-89 331.3 245 69.0
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 9.0e-89 330.9 262 67.9
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 1.2e-88 330.5 262 66.4
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 1.5e-88 330.1 209 76.1
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 4.5e-88 328.6 244 68.4
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 5.8e-88 328.2 210 76.7
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 5.8e-88 328.2 262 67.9
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 5.8e-88 328.2 228 72.4
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 9.9e-88 327.4 244 67.6
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 9.9e-88 327.4 264 65.5
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 1.3e-87 327.0 268 65.7
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 1.7e-87 326.6 247 68.0
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 3.8e-87 325.5 239 69.5
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 6.4e-87 324.7 228 73.7
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 8.4e-87 324.3 235 68.9
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 1.1e-86 323.9 246 67.9
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.4e-86 323.6 231 70.1
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 1.4e-86 323.6 258 65.9
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 2.4e-86 322.8 230 70.4
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 4.2e-86 322.0 269 65.4
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 5.5e-86 321.6 264 65.2
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 7.1e-86 321.2 260 66.9
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 9.3e-86 320.9 268 63.4
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 9.3e-86 320.9 259 67.6
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.2e-85 320.5 260 66.5
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.6e-85 320.1 215 75.3
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 4.6e-85 318.5 176 87.5
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 6.0e-85 318.2 237 68.8
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 6.0e-85 318.2 254 64.6
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 1.0e-84 317.4 204 74.5
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.8e-84 316.6 204 74.0
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.3e-84 316.2 258 62.4
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 5.1e-84 315.1 245 69.0
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 8.7e-84 314.3 258 62.0
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 1.5e-83 313.5 219 72.6
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.5e-83 312.8 214 72.4
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 7.4e-83 311.2 272 61.8
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 7.4e-83 311.2 237 67.5
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 7.4e-83 311.2 256 63.3
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 8.2e-82 307.8 256 65.2
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 3.1e-81 305.8 184 78.3
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 4.0e-81 305.4 200 75.0
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 5.3e-81 305.1 236 65.3
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 9.0e-81 304.3 237 67.5
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 1.5e-80 303.5 265 60.0
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.6e-80 302.8 260 60.4
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 4.5e-80 302.0 185 77.8
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 4.5e-80 302.0 239 64.9
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 1.0e-79 300.8 185 77.8
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 1.0e-79 300.8 185 77.8
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 1.0e-79 300.8 226 62.8
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 1.3e-79 300.4 250 61.2
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 2.2e-79 299.7 203 72.4
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 4.9e-79 298.5 203 71.9
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 4.9e-79 298.5 176 79.0
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 6.5e-79 298.1 207 67.6
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 6.5e-79 298.1 212 70.3
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 6.5e-79 298.1 212 71.2
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 1.1e-78 297.4 260 62.7
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 1.1e-78 297.4 203 72.4
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 1.9e-78 296.6 231 62.8
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 2.5e-78 296.2 208 66.8
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 2.5e-78 296.2 241 65.1
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 5.5e-78 295.0 178 78.7
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 1.6e-77 293.5 212 70.8
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 3.5e-77 292.4 184 73.4
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 1.0e-76 290.8 231 63.2
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 1.1e-75 287.3 274 56.9
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 1.9e-75 286.6 274 56.9
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 9.7e-75 284.3 176 80.1
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 4.8e-74 282.0 205 69.8
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 4.8e-74 282.0 263 61.2
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 3.1e-73 279.3 212 63.2
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 1.5e-72 276.9 209 67.9
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 4.5e-72 275.4 162 78.4
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 4.5e-72 275.4 227 60.4
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 1.3e-71 273.9 229 60.3
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 1.4e-70 270.4 232 61.6
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 2.5e-70 269.6 150 82.7
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 8.7e-68 261.2 257 55.6
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 3.3e-67 259.2 174 70.7
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 2.4e-65 253.1 259 56.8
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 7.2e-62 241.5 178 65.2
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 2.0e-59 233.4 174 66.1
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 2.0e-59 233.4 206 56.8
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 3.1e-57 226.1 123 81.3
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 4.5e-56 222.2 228 54.8
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 3.2e-54 216.1 206 51.5
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.6e-48 196.4 240 44.2
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 8.5e-47 191.4 179 52.5
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 1.4e-44 184.1 247 42.5
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 9.4e-38 161.4 156 57.7
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.6e-37 160.6 96 75.0
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 5.4e-33 145.6 146 58.9
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 8.3e-26 121.7 99 65.7
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 8.3e-26 121.7 114 60.5
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.5e-22 110.9 171 37.4
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-21 106.7 86 70.9
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-21 106.7 114 61.4
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 3.6e-21 106.3 130 53.8
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.8e-20 104.0 86 68.6
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 4.0e-20 102.8 114 56.1
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 4.0e-20 102.8 174 35.6
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.9e-18 96.7 62 67.7
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 5.6e-14 82.4 72 69.4
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 5.8e-11 72.4 124 43.5
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 4.9e-10 69.3 100 53.0
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 1.1e-09 68.2 47 68.1
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 9.2e-09 65.1 69 53.6
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.0e-07 61.6 88 44.3


User provided reference genes

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