Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 7.1e-170 600.5 305 100.0
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.0e-147 526.9 304 87.5
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 9.4e-146 520.4 319 82.8
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.1e-141 506.9 303 82.2
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 9.1e-141 503.8 303 82.5
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 4.5e-140 501.5 302 81.8
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 7.7e-140 500.7 303 81.8
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.0e-139 500.4 303 81.2
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 8.5e-139 497.3 302 80.5
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 8.5e-139 497.3 302 80.5
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 8.5e-139 497.3 303 81.2
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.1e-138 496.9 303 81.5
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 3.2e-138 495.4 303 80.2
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 3.2e-138 495.4 303 80.2
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.5e-138 494.6 304 80.9
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.6e-137 493.0 304 79.3
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.6e-137 493.0 304 80.3
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.7e-137 492.3 298 81.9
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.1e-137 491.1 304 79.9
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 8.0e-137 490.7 303 79.9
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 1.4e-136 490.0 303 79.9
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.0e-136 488.8 304 79.3
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 4.0e-136 488.4 304 78.6
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 6.7e-136 487.6 303 79.2
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 8.8e-136 487.3 305 78.4
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 8.8e-136 487.3 304 78.9
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 8.8e-136 487.3 303 79.2
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.5e-135 486.5 303 79.2
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 2.6e-135 485.7 303 78.5
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 4.4e-135 485.0 304 79.3
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 5.7e-135 484.6 305 77.7
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 9.7e-135 483.8 304 78.3
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.7e-134 483.0 302 78.5
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.7e-134 483.0 312 76.3
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 2.8e-134 482.3 304 78.0
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.1e-133 480.3 304 77.6
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.8e-133 479.6 304 77.3
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 4.1e-133 478.4 304 76.6
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 5.3e-133 478.0 317 76.3
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 7.0e-133 477.6 303 78.2
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 9.1e-133 477.2 304 77.3
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 9.1e-133 477.2 304 76.3
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.2e-132 476.9 303 76.6
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.2e-132 476.9 302 78.8
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.6e-132 476.5 304 76.3
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 3.5e-132 475.3 304 76.3
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.5e-132 474.9 302 79.1
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 4.5e-132 474.9 302 77.8
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 5.9e-132 474.6 302 77.8
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.7e-131 473.0 317 74.8
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 2.9e-131 472.2 304 76.0
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 6.5e-131 471.1 303 77.2
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 8.5e-131 470.7 302 77.5
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 7.2e-130 467.6 303 76.6
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.2e-129 466.8 303 75.6
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.6e-129 466.5 304 76.3
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.1e-129 466.1 303 75.2
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 8.0e-129 464.2 328 71.6
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.4e-128 463.4 305 73.8
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.5e-127 459.9 303 73.3
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.6e-127 459.1 304 76.6
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 5.7e-127 458.0 303 72.9
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 8.3e-126 454.1 303 74.6
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.2e-124 450.3 280 80.4
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-123 446.8 298 74.2
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 2.9e-123 445.7 304 72.4
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 5.0e-123 444.9 298 73.5
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 6.5e-123 444.5 304 72.0
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.1e-122 443.7 303 72.3
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.1e-122 443.7 279 79.6
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.2e-121 440.3 298 73.5
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 2.7e-121 439.1 298 72.8
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 6.1e-121 438.0 304 70.1
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.4e-120 436.8 303 69.6
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.4e-120 436.8 279 78.9
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 3.0e-120 435.6 301 69.8
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.2e-119 433.7 300 74.3
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 3.4e-119 432.2 279 76.7
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.7e-118 429.9 300 72.3
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 2.2e-118 429.5 304 70.4
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 3.7e-118 428.7 301 70.1
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 5.4e-117 424.9 283 75.3
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.6e-116 423.3 304 67.8
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 1.0e-115 420.6 305 66.9
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 1.3e-115 420.2 303 70.6
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.0e-115 418.3 313 69.6
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.0e-115 418.3 313 69.6
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 5.0e-115 418.3 301 68.1
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.1e-113 412.9 280 72.9
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 4.7e-113 411.8 304 70.4
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.0e-112 410.6 300 66.3
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 2.9e-110 402.5 299 65.6
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 6.4e-110 401.4 260 78.1
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 1.4e-109 400.2 260 76.5
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.4e-109 400.2 301 64.1
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 4.1e-109 398.7 264 74.2
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 1.6e-108 396.7 301 63.8
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 3.5e-108 395.6 259 74.9
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 3.0e-107 392.5 299 65.6
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 9.5e-106 387.5 302 62.9
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.6e-105 386.7 283 69.3
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.2e-105 384.8 300 61.7
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.0e-104 384.0 300 61.7
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 2.3e-104 382.9 297 60.6
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.1e-104 382.5 300 61.0
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 6.4e-102 374.8 303 63.0
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 6.0e-100 368.2 301 60.8
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 1.0e-99 367.5 280 64.6
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 6.2e-97 358.2 312 58.0
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 6.4e-94 348.2 298 59.4
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 4.1e-93 345.5 300 58.3
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-92 342.8 225 73.8
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 3.0e-91 339.3 228 71.1
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.1e-88 330.9 282 58.2
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-87 325.9 294 57.8
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.8e-87 325.1 296 59.5
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.3e-83 313.9 304 56.6
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.1e-82 310.8 281 59.1
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.9e-80 301.6 197 76.1
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 6.4e-78 295.0 308 51.6
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 7.1e-77 291.6 202 74.3
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 9.3e-69 264.6 279 56.6
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 5.3e-64 248.8 187 64.7
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 3.2e-53 213.0 280 42.1
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 2.0e-47 193.7 157 63.7
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 9.7e-42 174.9 109 77.1
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.7e-41 174.1 121 71.1
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 4.5e-39 166.0 117 70.1
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 2.1e-36 157.1 116 64.7
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.8e-35 154.1 112 64.3
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.8e-24 117.5 80 73.8
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 4.1e-24 116.3 80 73.8
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 9.1e-24 115.2 73 80.8
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 9.1e-24 115.2 121 56.2
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.9e-21 107.5 79 70.9
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 1.2e-20 104.8 243 29.6
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 6.1e-20 102.4 75 68.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 6.1e-20 102.4 75 68.0
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.0e-19 101.7 265 27.9
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.2e-18 98.2 104 51.0
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 2.6e-18 97.1 76 68.4
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 3.7e-17 93.2 73 63.0
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 4.8e-17 92.8 120 49.2
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 1.8e-16 90.9 60 73.3
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 5.3e-16 89.4 63 71.4
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.0e-15 87.4 67 67.2
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 5.9e-15 85.9 62 69.4
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 5.9e-15 85.9 62 69.4
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 5.9e-15 85.9 62 69.4
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 5.9e-15 85.9 62 69.4
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 1.3e-14 84.7 64 70.3
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 3.8e-14 83.2 62 69.4
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 3.8e-14 83.2 141 37.6
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.1e-13 81.6 64 67.2
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 1.1e-13 81.6 63 66.7
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 7.2e-13 79.0 63 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 9.4e-13 78.6 76 50.0
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 2.7e-12 77.0 71 57.7
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 6.8e-11 72.4 58 63.8
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 5.7e-10 69.3 259 29.0
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 9.1e-08 62.0 261 26.1
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 7.7e-07 58.9 60 55.0
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 6.5e-06 55.8 53 60.4
BcaB03g16077 Brassica carinata HOM05D032013 ORTHO05D004934 8.6e-06 55.5 45 66.7


User provided reference genes

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