Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G131400 Carya illinoinensis HOM05D001186 ORTHO05D000971 2.9e-80 302.4 220 100.0
Haze_18687 Corylus avellana HOM05D001186 ORTHO05D000971 1.1e-34 151.0 229 44.1
QL10p025510 Quercus lobata HOM05D001186 ORTHO05D000971 5.4e-34 148.7 235 40.9
Manes.01G010900 Manihot esculenta HOM05D001186 ORTHO05D000971 1.0e-32 144.4 219 61.2
Duzib205G0230 Durio zibethinus HOM05D001186 ORTHO05D000971 2.2e-32 143.3 238 48.3
Duzib084G0272 Durio zibethinus HOM05D001186 ORTHO05D000971 1.1e-31 141.0 231 54.1
Gohir.D08G105100 Gossypium hirsutum HOM05D001186 ORTHO05D000971 4.2e-31 139.0 237 44.7
Cfa019761 Carpinus fangiana HOM05D001186 ORTHO05D000971 5.5e-31 138.7 234 42.3
Gorai.004G112000 Gossypium raimondii HOM05D001186 ORTHO05D000971 1.2e-30 137.5 237 44.7
Gohir.A08G093800 Gossypium hirsutum HOM05D001186 ORTHO05D000971 3.6e-30 136.0 237 43.5
Dinv28111 Davidia involucrata HOM05D001186 ORTHO05D000971 8.3e-27 124.8 214 46.3
Cpa.g.sc3.505 Carica papaya HOM05D001186 ORTHO05D000971 1.2e-25 120.9 241 57.7
Thecc.03G036500 Theobroma cacao HOM05D001186 ORTHO05D000971 1.6e-25 120.6 177 67.2
Hma1.2p1_0653F.1_g196240 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 2.0e-25 120.2 215 48.4
COL.COLO4_32831 Corchorus olitorius HOM05D001186 ORTHO05D000971 1.0e-24 117.9 228 57.0
Sed0003786 Sechium edule HOM05D001186 ORTHO05D000971 3.8e-24 115.9 241 43.2
Cpa.g.c39771 Carica papaya HOM05D001186 ORTHO05D000971 1.9e-23 113.6 205 55.1
DCAR_023208 Daucus carota HOM05D001186 ORTHO05D000971 3.3e-23 112.8 211 36.0
Potri.012G055900 Populus trichocarpa HOM05D001186 ORTHO05D000971 1.8e-21 107.1 219 40.6
Cpa.g.c35103 Carica papaya HOM05D001186 ORTHO05D000971 3.0e-21 106.3 184 52.2
Ciclev10023791m.g Citrus clementina HOM05D001186 ORTHO05D000971 4.0e-21 105.9 193 45.6
Aqoxy3G00278 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 5.2e-21 105.5 214 44.4
Lj2g0004597 Lotus japonicus HOM05D001186 ORTHO05D000971 1.2e-20 104.4 237 40.9
Lalb_Chr22g0353121 Lupinus albus HOM05D001186 ORTHO05D000971 1.2e-20 104.4 175 40.0
TAR629G3519 Trochodendron aralioides HOM05D001186 ORTHO05D000971 2.0e-20 103.6 200 38.5
Sabra12G0039700 Salix brachista HOM05D001186 ORTHO05D000971 9.8e-20 101.3 215 38.6
MELO3C017312.2 Cucumis melo HOM05D001186 ORTHO05D000971 1.3e-19 100.9 257 45.1
TAR371G0320 Trochodendron aralioides HOM05D001186 ORTHO05D000971 1.1e-18 97.8 191 36.1
TPR.G15166 Trifolium pratense HOM05D001186 ORTHO05D000971 1.8e-18 97.1 253 42.3
Medtr6g084200 Medicago truncatula HOM05D001186 ORTHO05D000971 4.1e-18 95.9 227 43.6
Ciclev10023693m.g Citrus clementina HOM05D001186 ORTHO05D000971 5.4e-18 95.5 189 44.4
Duzib268G0437 Durio zibethinus HOM05D001186 ORTHO05D000971 1.3e-16 90.9 197 34.0
Glyma.09G183700 Glycine max HOM05D001186 ORTHO05D000971 1.3e-16 90.9 250 35.2
Potri.010G123700 Populus trichocarpa HOM05D001186 ORTHO05D000971 1.3e-16 90.9 222 32.0
VMungo0464G1252 Vigna mungo HOM05D001186 ORTHO05D000971 1.3e-16 90.9 232 34.5
MELO3C010713.2 Cucumis melo HOM05D001186 ORTHO05D000971 3.0e-16 89.7 220 35.5
Thecc.02G227800 Theobroma cacao HOM05D001186 ORTHO05D000971 3.9e-16 89.4 198 32.8
CsaV3_1G003880 Cucumis sativus L. HOM05D001406 ORTHO05D002467 1.5e-15 87.4 204 57.8
Oeu008243.1 Olea europaea HOM05D001186 ORTHO05D000971 1.9e-15 87.0 190 40.5
Potri.015G046600 Populus trichocarpa HOM05D001186 ORTHO05D000971 1.9e-15 87.0 208 34.1
ClCG06G014760 Citrullus lanatus HOM05D001186 ORTHO05D000971 5.6e-15 85.5 232 37.5
Glyma.07G092500 Glycine max HOM05D001186 ORTHO05D000971 1.2e-14 84.3 235 29.8
Phvul.004G156300 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 2.1e-14 83.6 171 59.6
CsaV3_2G025160 Cucumis sativus L. HOM05D001186 ORTHO05D000971 2.8e-14 83.2 230 43.0
Lalb_Chr05g0222471 Lupinus albus HOM05D001186 ORTHO05D000971 2.8e-14 83.2 205 32.2
CSS0040830 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 6.2e-14 82.0 236 46.6
QL01p041163 Quercus lobata HOM05D001186 ORTHO05D000971 8.0e-14 81.6 197 31.0
Sabra15G0039100 Salix brachista HOM05D001186 ORTHO05D000971 1.0e-13 81.3 192 35.9
Oeu001004.1 Olea europaea HOM05D001186 ORTHO05D000971 2.3e-13 80.1 205 42.4
Prupe.5G222000 Prunus persica HOM05D001186 ORTHO05D000971 2.3e-13 80.1 160 44.4
Manes.14G103400 Manihot esculenta HOM05D001186 ORTHO05D000971 5.2e-13 79.0 210 31.0
PGR142G3041 Punica granatum HOM05D001186 ORTHO05D000971 5.2e-13 79.0 158 38.0
Aa31LG8G5190 Aethionema arabicum HOM05D001186 ORTHO05D000971 6.8e-13 78.6 230 29.1
Haze_17495 Corylus avellana HOM05D001186 ORTHO05D000971 8.9e-13 78.2 195 41.5
Carub.0003s1814 Capsella rubella HOM05D001186 ORTHO05D000971 1.2e-12 77.8 100 59.0
Atru.chr11.114 Acer truncatum HOM05D001186 ORTHO05D000971 1.5e-12 77.4 176 38.6
Nn4g23866 Nelumbo nucifera HOM05D001186 ORTHO05D000971 1.5e-12 77.4 204 48.0
Dinv31630 Davidia involucrata HOM05D001186 ORTHO05D000971 3.4e-12 76.3 172 31.4
COL.COLO4_07638 Corchorus olitorius HOM05D001186 ORTHO05D000971 4.4e-12 75.9 196 30.1
Psat1g034720 Pisum sativum HOM05D001186 ORTHO05D000971 1.3e-11 74.3 233 38.2
Lsat_1_v5_gn_8_40921 Lactuca sativa HOM05D001186 ORTHO05D000971 2.9e-11 73.2 194 28.9
FAN04G0269 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.7e-11 72.8 86 72.1
MBI09_g40766_MAGBIO Magnolia biondii HOM05D001186 ORTHO05D000971 3.7e-11 72.8 212 34.4
Rhsim08G0133100 Rhododendron simsii HOM05D001186 ORTHO05D000971 4.9e-11 72.4 72 50.0
FAN08G3585 Fragaria x ananassa HOM05D001186 ORTHO05D000971 6.4e-11 72.0 88 70.5
AL3G31640 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 8.3e-11 71.6 73 52.1
EL10Ac5g11455 Beta vulgaris HOM05D001186 ORTHO05D000971 1.1e-10 71.2 149 36.2
A01p35980 Brassica napus HOM05D001186 ORTHO05D000971 1.1e-10 71.2 103 44.7
BraA01t03679Z Brassica rapa HOM05D001186 ORTHO05D000971 1.1e-10 71.2 103 44.7
Ca_25487_v3 Cicer arietinum L. HOM05D001186 ORTHO05D000971 1.1e-10 71.2 227 30.4
Dinv15684 Davidia involucrata HOM05D012236 ORTHO05D001602 1.1e-10 71.2 94 62.8
FvH4_5g11980 Fragaria vesca HOM05D001186 ORTHO05D000971 1.1e-10 71.2 90 68.9
FAN13G2378 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.1e-10 71.2 90 68.9
FAN18G1152 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.1e-10 71.2 90 68.9
CSS0012233 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 1.4e-10 70.9 202 33.2
FAN18G4498 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.4e-10 70.9 91 68.1
AT3G18360 Arabidopsis thaliana HOM05D001186 ORTHO05D000971 1.9e-10 70.5 74 50.0
TWI31G0680 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 1.9e-10 70.5 83 42.2
Lsat_1_v5_gn_2_14741 Lactuca sativa HOM05D001186 ORTHO05D000971 2.4e-10 70.1 235 37.4
Prupe.1G312500 Prunus persica HOM05D001186 ORTHO05D000971 2.4e-10 70.1 222 36.0
Sabra10G0093700 Salix brachista HOM05D001186 ORTHO05D000971 2.4e-10 70.1 216 35.6
Cc11_g10020 Coffea canephora HOM05D001186 ORTHO05D000971 3.2e-10 69.7 178 31.5
CiPaw.15G086400 Carya illinoinensis HOM05D001186 ORTHO05D000971 4.1e-10 69.3 194 27.8
ECA233G1982 Erigeron canadensis HOM05D001186 ORTHO05D000971 4.1e-10 69.3 194 28.4
BcaC09g48794 Brassica carinata HOM05D001186 ORTHO05D000971 7.0e-10 68.6 73 50.7
C01p45850 Brassica napus HOM05D001186 ORTHO05D000971 7.0e-10 68.6 73 50.7
BolC1t04547H Brassica oleracea HOM05D001186 ORTHO05D000971 7.0e-10 68.6 73 50.7
CARHR093710 Cardamine hirsuta HOM05D001186 ORTHO05D000971 7.0e-10 68.6 225 32.0
Dinv21073 Davidia involucrata HOM05D001186 ORTHO05D000971 7.0e-10 68.6 222 26.1
Nitab4.5_0002906g0010 Nicotiana tabacum HOM05D001186 ORTHO05D000971 7.0e-10 68.6 71 50.7
RcHm_v2.0_Chr4g0435011 Rosa chinensis HOM05D001186 ORTHO05D000971 9.2e-10 68.2 200 30.5
TAR629G0393 Trochodendron aralioides HOM05D001186 ORTHO05D000971 9.2e-10 68.2 69 52.2
Sp3g16470 Schrenkiella parvula HOM05D001186 ORTHO05D000971 1.2e-09 67.8 73 61.6
Gohir.D05G323700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.6e-09 67.4 178 42.1
Gorai.009G347500 Gossypium raimondii HOM05D001186 ORTHO05D000971 1.6e-09 67.4 178 37.6
Thhalv10022101m.g Eutrema salsugineum HOM05D001186 ORTHO05D000971 2.0e-09 67.0 84 46.4
Gohir.A05G321500 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.0e-09 67.0 178 37.1
MD16G1041600 Malus domestica HOM05D001186 ORTHO05D000971 2.0e-09 67.0 204 32.8
BcaB06g25879 Brassica carinata HOM05D001186 ORTHO05D000971 2.7e-09 66.6 98 55.1
Lalb_Chr16g0387891 Lupinus albus HOM05D001186 ORTHO05D000971 2.7e-09 66.6 188 31.4
SalBow8G5321 Salvia bowleyana HOM05D001186 ORTHO05D000971 2.7e-09 66.6 73 46.6
Manes.06G067000 Manihot esculenta HOM05D001186 ORTHO05D000971 7.8e-09 65.1 190 27.4
TWI81G0318 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 7.8e-09 65.1 74 70.3
Hma1.2p1_0061F.1_g033760 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 1.7e-08 63.9 194 30.9
PSO541G6297 Papaver somniferum HOM05D001186 ORTHO05D000971 1.7e-08 63.9 203 46.8
MSTRG.847 Avicennia marina HOM05D001186 ORTHO05D000971 2.3e-08 63.5 181 29.3
PSO675G7373 Papaver somniferum HOM05D001186 ORTHO05D000971 3.0e-08 63.2 202 50.5
CiPaw.16G065400 Carya illinoinensis HOM05D001186 ORTHO05D000971 5.0e-08 62.4 208 26.9
FAN07G0491 Fragaria x ananassa HOM05D001186 ORTHO05D000971 5.0e-08 62.4 73 46.6
CAN.G1425.6 Capsicum annuum HOM05D001186 ORTHO05D000971 6.6e-08 62.0 65 52.3
FvH4_4g27220 Fragaria vesca HOM05D001186 ORTHO05D000971 1.5e-07 60.8 73 45.2
FAN12G0246 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.5e-07 60.8 73 45.2
FAN12G0708 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.5e-07 60.8 73 45.2
THA.LOC104806066 Tarenaya hassleriana HOM05D001186 ORTHO05D000971 1.5e-07 60.8 84 45.2
CAN.G1425.4 Capsicum annuum HOM05D001186 ORTHO05D000971 1.9e-07 60.5 77 46.8
FAN17G0570 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.9e-07 60.5 195 29.2
PGSC0003DMG400005637 Solanum tuberosum HOM05D001186 ORTHO05D000971 1.9e-07 60.5 74 50.0
Migut.L01057 Erythranthe guttata HOM05D001186 ORTHO05D000971 2.5e-07 60.1 70 47.1
FAN22G0160 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.5e-07 60.1 73 45.2
Rhsim03G0008700 Rhododendron simsii HOM05D001186 ORTHO05D000971 2.5e-07 60.1 76 65.8
CAN.G423.13 Capsicum annuum HOM05D001926 ORTHO05D000971 3.3e-07 59.7 80 48.8
QL01p041179 Quercus lobata HOM05D001186 ORTHO05D000971 3.3e-07 59.7 76 42.1
HPP92_004813 Vanilla planifolia HOM05D001186 ORTHO05D000971 3.3e-07 59.7 40 72.5
arahy.Tifrunner.gnm1.ann1.407XUT Arachis hypogaea HOM05D001186 ORTHO05D000971 4.3e-07 59.3 92 50.0
arahy.Tifrunner.gnm1.ann1.6A166J Arachis hypogaea HOM05D001186 ORTHO05D000971 4.3e-07 59.3 92 50.0
CANSAT01G1945 Cannabis sativa HOM05D001186 ORTHO05D000971 4.3e-07 59.3 70 45.7
Lalb_Chr21g0308871 Lupinus albus HOM05D001186 ORTHO05D000971 5.6e-07 58.9 72 43.1
Solyc03g119410.1 Solanum lycopersicum HOM05D001186 ORTHO05D000971 5.6e-07 58.9 74 48.6
Nn3g17865 Nelumbo nucifera HOM05D001186 ORTHO05D000971 7.3e-07 58.5 84 56.0
SGA_v2.0_scaffold38G14938 Striga asiatica HOM05D001186 ORTHO05D000971 9.5e-07 58.2 83 42.2
unitig_22.g6558 Utricularia gibba HOM05D001186 ORTHO05D000971 1.6e-06 57.4 72 40.3
Cpa.g.sc1.29 Carica papaya HOM05D001186 ORTHO05D000971 2.1e-06 57.0 78 39.7
Peaxi162Scf00015g00106 Petunia axillaris HOM05D001186 ORTHO05D000971 2.1e-06 57.0 39 69.2
ClCG05G022640 Citrullus lanatus HOM05D001186 ORTHO05D000971 2.8e-06 56.6 67 44.8
Potri.002G070600 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.8e-06 56.6 67 44.8
Potri.005G189300 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.8e-06 56.6 67 46.3
ATR1125G102 Amborella trichopoda HOM05D001186 ORTHO05D000971 3.6e-06 56.2 197 26.9
Nitab4.5_0000489g0090 Nicotiana tabacum HOM05D001186 ORTHO05D000971 3.6e-06 56.2 180 29.4
A07p15190 Brassica napus HOM05D001186 ORTHO05D000971 4.7e-06 55.8 80 42.5
BraA07t29260Z Brassica rapa HOM05D001626 ORTHO05D001563 4.7e-06 55.8 80 42.5
ECA238G3992 Erigeron canadensis HOM05D001186 ORTHO05D000971 4.7e-06 55.8 35 71.4
Glyma.10G273300 Glycine max HOM05D001186 ORTHO05D000971 4.7e-06 55.8 72 43.1
PGR119G2222 Punica granatum HOM05D001186 ORTHO05D000971 4.7e-06 55.8 197 33.5
RcHm_v2.0_Chr6g0276681 Rosa chinensis HOM05D001186 ORTHO05D000971 4.7e-06 55.8 69 58.0
HPP92_011922 Vanilla planifolia HOM05D001186 ORTHO05D000971 4.7e-06 55.8 78 55.1
arahy.Tifrunner.gnm1.ann1.XR04TG Arachis hypogaea HOM05D001186 ORTHO05D000971 6.2e-06 55.5 67 70.1
Glyma.08G041900 Glycine max HOM05D001186 ORTHO05D000971 6.2e-06 55.5 72 43.1
Sabra02G0055300 Salix brachista HOM05D001186 ORTHO05D000971 6.2e-06 55.5 67 44.8
Phvul.007G028200 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 8.1e-06 55.1 84 39.3
TWI79G1623 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 8.1e-06 55.1 85 37.6


User provided reference genes

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