Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 9.3e-37 156.4 80 100.0
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.9e-28 126.7 76 80.3
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.9e-28 126.7 76 80.3
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.9e-28 126.7 76 80.3
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 6.7e-27 123.6 75 81.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.5e-26 121.7 77 76.6
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.5e-26 121.7 77 76.6
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.5e-26 121.7 77 76.6
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.5e-26 121.7 77 76.6
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 3.3e-26 121.3 76 76.3
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.3e-25 119.4 75 76.0
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.3e-25 119.4 75 76.0
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.7e-25 119.0 76 75.0
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.7e-25 119.0 76 76.3
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.2e-25 118.6 76 76.3
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.2e-25 118.6 76 76.3
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.2e-25 118.6 73 78.1
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 3.7e-25 117.9 71 80.3
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 3.7e-25 117.9 76 75.0
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 3.7e-25 117.9 77 74.0
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.7e-25 117.9 77 74.0
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 3.7e-25 117.9 75 76.0
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.8e-25 117.5 76 76.3
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 8.2e-25 116.7 76 75.0
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 8.2e-25 116.7 70 81.4
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 8.2e-25 116.7 75 72.0
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.8e-24 115.5 75 73.3
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 2.4e-24 115.2 72 80.6
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 2.4e-24 115.2 75 74.7
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.2e-23 112.8 70 78.6
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.5e-23 112.5 69 79.7
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 3.4e-23 111.3 74 68.9
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 4.5e-23 110.9 76 68.4
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 7.7e-23 110.2 75 68.0
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 7.7e-23 110.2 70 74.3
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 7.7e-23 110.2 79 69.6
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 1.7e-22 109.0 75 70.7
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.7e-22 109.0 78 67.9
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 2.2e-22 108.6 75 70.7
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.9e-22 108.2 68 76.5
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 2.9e-22 108.2 73 72.6
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 2.9e-22 108.2 70 71.4
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 3.8e-22 107.8 69 71.0
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 6.5e-22 107.1 75 70.7
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 8.5e-22 106.7 75 66.7
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.4e-21 105.9 75 66.7
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.9e-21 105.5 73 69.9
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.5e-21 105.1 68 73.5
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 2.5e-21 105.1 75 65.3
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 3.2e-21 104.8 69 76.8
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 3.2e-21 104.8 69 76.8
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 5.5e-21 104.0 76 65.8
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.2e-21 103.6 73 69.9
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 9.4e-21 103.2 72 69.4
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 9.4e-21 103.2 72 69.4
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.6e-20 102.4 69 72.5
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.6e-20 102.4 75 68.0
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.6e-20 102.4 76 61.8
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.1e-20 102.1 72 70.8
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.7e-20 101.7 68 75.0
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.7e-20 101.7 75 65.3
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.6e-20 101.3 75 62.7
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.7e-20 100.9 73 68.5
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 6.1e-20 100.5 75 64.0
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 6.1e-20 100.5 73 64.4
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 6.1e-20 100.5 69 72.5
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.0e-19 99.8 75 64.0
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 1.4e-19 99.4 69 72.5
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.4e-19 99.4 71 66.2
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.4e-19 99.4 72 66.7
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.8e-19 99.0 76 61.8
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.8e-19 99.0 70 64.3
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 3.0e-19 98.2 68 66.2
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.9e-19 97.8 74 62.2
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 5.1e-19 97.4 73 63.0
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 8.8e-19 96.7 75 60.0
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 8.8e-19 96.7 69 66.7
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 8.8e-19 96.7 73 64.4
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-18 96.3 68 69.1
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.5e-18 95.9 69 69.6
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 2.0e-18 95.5 76 61.8
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.7e-18 94.0 68 67.6
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 7.4e-18 93.6 72 59.7
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-17 92.8 68 64.7
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 1.7e-17 92.4 68 61.8
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.8e-17 91.7 72 56.9
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 2.8e-17 91.7 72 61.1
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 3.7e-17 91.3 72 58.3
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 4.8e-17 90.9 77 58.4
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 8.2e-17 90.1 75 57.3
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.1e-16 89.7 72 56.9
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-16 89.7 80 60.0
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 2.4e-16 88.6 67 62.7
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.1e-16 87.8 67 61.2
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 4.1e-16 87.8 76 52.6
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 4.1e-16 87.8 69 62.3
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 5.3e-16 87.4 73 53.4
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 5.3e-16 87.4 68 58.8
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 7.0e-16 87.0 75 54.7
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.2e-15 86.3 72 52.8
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.2e-15 86.3 72 52.8
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.2e-15 86.3 67 61.2
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.0e-15 85.5 73 49.3
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.0e-15 85.5 70 51.4
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 2.6e-15 85.1 74 55.4
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 7.7e-15 83.6 73 47.9
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 7.7e-15 83.6 73 50.7
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.3e-14 82.8 69 50.7
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.3e-14 82.8 69 50.7
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.3e-14 82.8 69 50.7
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 2.2e-14 82.0 73 47.9
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.9e-14 81.6 67 52.2
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 2.9e-14 81.6 66 54.5
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 3.8e-14 81.3 65 55.4
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 6.5e-14 80.5 65 55.4
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 6.5e-14 80.5 69 49.3
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 1.0e-11 73.2 53 66.0
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 6.7e-11 70.5 54 66.7
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.1e-10 69.7 56 62.5
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.5e-10 67.0 61 59.0
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.7e-10 66.6 57 64.9
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.8e-08 62.4 50 64.0
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 2.4e-08 62.0 46 67.4
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.4e-08 62.0 40 80.0
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 7.0e-08 60.5 44 68.2
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.7e-07 58.5 60 50.0
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 2.7e-07 58.5 46 60.9
Duzib151G0401 Durio zibethinus HOM05D009285 ORTHO05D009865 5.9e-07 57.4 69 37.7
Eucgr.H03665 Eucalyptus grandis HOM05D000262 ORTHO05D009865 1.3e-06 56.2 72 38.9
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.7e-06 55.8 45 60.0
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 2.2e-06 55.5 39 64.1
FvH4_3g29750 Fragaria vesca HOM05D009285 ORTHO05D009865 5.0e-06 54.3 72 37.5


User provided reference genes

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