Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G120100 Carya illinoinensis HOM05D000005 ORTHO05D034230 3.7e-97 358.2 181 100.0
CiPaw.15G119700 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.1e-72 276.9 168 85.1
CiPaw.15G121000 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.1e-72 276.9 168 85.1
CiPaw.15G120400 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.1e-64 248.8 158 81.6
CiPaw.15G119200 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.5e-61 239.2 168 76.2
CiPaw.15G120900 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.6e-55 219.9 153 77.1
CiPaw.15G118900 Carya illinoinensis HOM05D000005 ORTHO05D000012 5.5e-53 211.5 170 66.5
CiPaw.15G148300 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.7e-49 199.9 165 65.5
CiPaw.15G120700 Carya illinoinensis HOM05D000005 ORTHO05D000012 9.2e-40 167.5 122 73.8
CiPaw.15G169600 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.1e-36 156.4 165 59.4
CiPaw.15G121300 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.9e-29 133.3 103 72.8
CiPaw.15G169400 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.9e-24 116.7 134 57.5
CiPaw.15G167800 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.7e-22 110.2 170 42.9
CiPaw.15G169500 Carya illinoinensis HOM05D000005 ORTHO05D000012 4.3e-21 105.5 134 50.7
CiPaw.15G160200 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.4e-17 91.7 126 44.4
CiPaw.16G110100 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.4e-16 89.7 101 50.5
CiPaw.15G158500 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.2e-16 89.4 112 45.5
CiPaw.16G108800 Carya illinoinensis HOM05D000005 ORTHO05D000012 4.1e-16 89.0 99 51.5
QL11p021408 Quercus lobata HOM05D000005 ORTHO05D000012 4.1e-16 89.0 124 42.7
CiPaw.15G159000 Carya illinoinensis HOM05D000005 ORTHO05D000012 5.4e-16 88.6 124 42.7
CiPaw.15G159900 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.1e-15 86.7 145 37.2
CiPaw.16G108600 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.5e-15 85.9 134 44.0
CiPaw.15G170600 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.0e-14 84.3 159 40.3
Eucgr.C03469 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.7e-14 83.6 115 41.7
Eucgr.L01328 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.7e-14 83.6 115 41.7
Eucgr.L01333 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.1e-14 82.0 101 43.6
CiPaw.15G158600 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.5e-13 80.5 123 40.7
CiPaw.15G157400 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.5e-13 79.7 149 36.9
CiPaw.15G158200 Carya illinoinensis HOM05D000005 ORTHO05D000012 4.3e-13 79.0 96 44.8
CiPaw.15G176000 Carya illinoinensis HOM05D000005 ORTHO05D000012 9.6e-13 77.8 94 50.0
CiPaw.15G175600 Carya illinoinensis HOM05D000005 ORTHO05D034230 1.2e-12 77.4 94 50.0
RcHm_v2.0_Chr6g0276021 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-12 77.4 97 46.4
CiPaw.15G159200 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.6e-12 77.0 118 43.2
CiPaw.15G176500 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.1e-12 76.6 98 48.0
PGR102G1088 Punica granatum HOM05D000005 ORTHO05D000012 2.1e-12 76.6 146 38.4
Prupe.8G111100 Prunus persica HOM05D000005 ORTHO05D010497 2.8e-12 76.3 127 40.2
Eucgr.C03425 Eucalyptus grandis HOM05D000005 ORTHO05D010497 4.7e-12 75.5 115 39.1
CiPaw.15G135400 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.2e-12 75.1 104 47.1
Prupe.8G109000 Prunus persica HOM05D000005 ORTHO05D000012 6.2e-12 75.1 118 36.4
RcHm_v2.0_Chr4g0411691 Rosa chinensis HOM05D000005 ORTHO05D000012 6.2e-12 75.1 153 36.6
Prupe.5G074700 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-11 73.9 97 45.4
Eucgr.C03467 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.4e-11 73.2 71 53.5
Prupe.5G074600 Prunus persica HOM05D000005 ORTHO05D000012 3.1e-11 72.8 141 38.3
CiPaw.15G124400 Carya illinoinensis HOM05D000005 ORTHO05D000012 4.0e-11 72.4 106 41.5
CiPaw.16G111600 Carya illinoinensis HOM05D000005 ORTHO05D000012 4.0e-11 72.4 126 41.3
Prupe.8G108500 Prunus persica HOM05D000005 ORTHO05D000012 8.9e-11 71.2 109 38.5
Prupe.8G108800 Prunus persica HOM05D000005 ORTHO05D000012 8.9e-11 71.2 109 38.5
Prupe.8G109500 Prunus persica HOM05D000005 ORTHO05D000012 8.9e-11 71.2 85 45.9
CiPaw.15G120000 Carya illinoinensis HOM05D000005 ORTHO05D034230 1.2e-10 70.9 51 62.7
CiPaw.12G007100 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.0e-10 70.1 131 42.0
RcHm_v2.0_Chr4g0413891 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-10 70.1 166 34.9
Prupe.2G055200 Prunus persica HOM05D000005 ORTHO05D000012 3.4e-10 69.3 178 34.8
RcHm_v2.0_Chr4g0411761 Rosa chinensis HOM05D000005 ORTHO05D015130 3.4e-10 69.3 106 39.6
RcHm_v2.0_Chr6g0276051 Rosa chinensis HOM05D000005 ORTHO05D000012 3.4e-10 69.3 97 44.3
RcHm_v2.0_Chr6g0276061 Rosa chinensis HOM05D000005 ORTHO05D000012 3.4e-10 69.3 97 44.3
Prupe.8G109200 Prunus persica HOM05D000005 ORTHO05D000012 4.4e-10 68.9 93 44.1
CiPaw.05G247400 Carya illinoinensis HOM05D000005 ORTHO05D000012 7.6e-10 68.2 117 35.9
CiPaw.16G068800 Carya illinoinensis HOM05D000005 ORTHO05D000012 9.9e-10 67.8 102 50.0
PGR102G1117 Punica granatum HOM05D000005 ORTHO05D000012 9.9e-10 67.8 97 42.3
CiPaw.15G177500 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.7e-09 67.0 144 38.9
Prupe.2G045200 Prunus persica HOM05D000005 ORTHO05D000012 1.7e-09 67.0 103 40.8
Eucgr.H01444 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.9e-09 66.2 161 31.7
FAN19G1706 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.9e-09 66.2 104 38.5
FvH4_3g10020 Fragaria vesca HOM05D000005 ORTHO05D000012 3.8e-09 65.9 80 47.5
FAN26G1775 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.8e-09 65.9 80 43.8
RcHm_v2.0_Chr4g0412021 Rosa chinensis HOM05D000005 ORTHO05D000012 3.8e-09 65.9 153 36.6
FvH4_3g08681 Fragaria vesca HOM05D000005 ORTHO05D000012 4.9e-09 65.5 164 30.5
FAN08G0091 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.9e-09 65.5 92 42.4
AT5G48770 Arabidopsis thaliana HOM05D000005 ORTHO05D010246 6.4e-09 65.1 95 38.9
CiPaw.15G173800 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.4e-09 65.1 170 32.4
Manes.12G149700 Manihot esculenta HOM05D000005 ORTHO05D000012 6.4e-09 65.1 126 38.1
FAN11G1874 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.4e-09 64.7 159 30.8
RcHm_v2.0_Chr4g0413971 Rosa chinensis HOM05D000005 ORTHO05D015130 8.4e-09 64.7 153 35.9
FAN18G1249 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-08 64.3 93 43.0
RcHm_v2.0_Chr4g0414001 Rosa chinensis HOM05D000005 ORTHO05D015130 1.4e-08 63.9 149 34.2
RcHm_v2.0_Chr7g0216111 Rosa chinensis HOM05D000005 ORTHO05D010497 1.4e-08 63.9 159 34.0
FAN11G1260 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 63.5 92 42.4
FAN13G2851 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 63.5 92 40.2
FAN20G0174 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 63.5 93 43.0
FAN26G1159 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 63.5 148 33.1
FAN26G1949 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 63.5 124 37.9
FAN16G0776 Fragaria x ananassa HOM05D000005 ORTHO05D010497 2.4e-08 63.2 93 41.9
FvH4_2g14040 Fragaria vesca HOM05D000005 ORTHO05D000012 3.2e-08 62.8 81 46.9
FAN08G1734 Fragaria x ananassa HOM05D000005 ORTHO05D010497 3.2e-08 62.8 77 42.9
FAN08G2688 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.2e-08 62.8 77 42.9
FAN15G0727 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.2e-08 62.8 81 46.9
Prupe.8G111500 Prunus persica HOM05D000005 ORTHO05D000012 3.2e-08 62.8 79 46.8
FvH4_2g09350 Fragaria vesca HOM05D000005 ORTHO05D000012 4.2e-08 62.4 93 41.9
FvH4_4g13412 Fragaria vesca HOM05D000005 ORTHO05D015130 4.2e-08 62.4 123 38.2
FAN08G0727 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.2e-08 62.4 92 41.3
FAN26G1409 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.4e-08 62.0 124 37.9
Potri.001G307300 Populus trichocarpa HOM05D000005 ORTHO05D000012 5.4e-08 62.0 121 34.7
FvH4_5g03640 Fragaria vesca HOM05D000005 ORTHO05D010497 7.1e-08 61.6 69 50.7
RcHm_v2.0_Chr6g0261901 Rosa chinensis HOM05D000005 ORTHO05D000012 7.1e-08 61.6 101 39.6
FAN12G1517 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.3e-08 61.2 100 39.0
Prupe.8G111200 Prunus persica HOM05D000005 ORTHO05D000012 9.3e-08 61.2 110 36.4
Prupe.8G112100 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-07 60.8 79 45.6
RcHm_v2.0_Chr4g0413781 Rosa chinensis HOM05D000005 ORTHO05D010497 1.6e-07 60.5 166 32.5
RcHm_v2.0_Chr4g0413831 Rosa chinensis HOM05D000005 ORTHO05D015130 1.6e-07 60.5 155 32.9
Eucgr.F03254 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.1e-07 60.1 131 35.1
FvH4_3g09291 Fragaria vesca HOM05D000005 ORTHO05D010497 2.1e-07 60.1 69 49.3
FAN11G1062 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.1e-07 60.1 69 49.3
FAN13G2425 Fragaria x ananassa HOM05D000005 ORTHO05D010497 2.1e-07 60.1 91 40.7
RcHm_v2.0_Chr1g0328841 Rosa chinensis HOM05D000005 ORTHO05D010497 2.1e-07 60.1 84 46.4
FvH4_4g13420 Fragaria vesca HOM05D000005 ORTHO05D000012 2.7e-07 59.7 100 39.0
FAN13G1039 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.7e-07 59.7 91 39.6
RcHm_v2.0_Chr6g0261411 Rosa chinensis HOM05D000005 ORTHO05D010497 2.7e-07 59.7 147 32.7
CiPaw.15G178300 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.5e-07 59.3 158 33.5
Eucgr.H01453 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.5e-07 59.3 148 30.4
FAN08G1537 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.6e-07 58.9 92 41.3
FAN21G2766 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.6e-07 58.9 113 38.1
FAN27G0531 Fragaria x ananassa HOM05D000005 ORTHO05D010497 4.6e-07 58.9 93 38.7
FAN24G0617 Fragaria x ananassa HOM05D000005 ORTHO05D010497 6.0e-07 58.5 93 40.9
FAN24G1164 Fragaria x ananassa HOM05D000005 ORTHO05D010497 6.0e-07 58.5 93 40.9
Prupe.8G110600 Prunus persica HOM05D000005 ORTHO05D000012 6.0e-07 58.5 93 36.6
RcHm_v2.0_Chr4g0387221 Rosa chinensis HOM05D000005 ORTHO05D010497 6.0e-07 58.5 67 47.8
RcHm_v2.0_Chr4g0387981 Rosa chinensis HOM05D000005 ORTHO05D010497 6.0e-07 58.5 76 43.4
MELO3C004292.2 Cucumis melo HOM05D000005 ORTHO05D000012 7.8e-07 58.2 96 36.5
CsaV3_2G005050 Cucumis sativus L. HOM05D000005 ORTHO05D000012 7.8e-07 58.2 81 39.5
FvH4_5g38870 Fragaria vesca HOM05D000005 ORTHO05D000012 7.8e-07 58.2 77 41.6
MD04G1015000 Malus domestica HOM05D000005 ORTHO05D000012 7.8e-07 58.2 135 31.1
RcHm_v2.0_Chr4g0386561 Rosa chinensis HOM05D000005 ORTHO05D000012 7.8e-07 58.2 103 38.8
Eucgr.L00804 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.0e-06 57.8 131 28.2
A07p30080 Brassica napus HOM05D000005 ORTHO05D010246 1.3e-06 57.4 92 38.0
Potri.019G002500 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.3e-06 57.4 156 35.3
CiPaw.15G170100 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.7e-06 57.0 150 32.7
Eucgr.H01438 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.7e-06 57.0 130 31.5
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-06 57.0 103 40.8
BolC4t26259H Brassica oleracea HOM05D000005 ORTHO05D010246 2.3e-06 56.6 109 37.6
BraA07t30645Z Brassica rapa HOM05D000005 ORTHO05D010246 2.3e-06 56.6 92 37.0
Eucgr.E03278 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.3e-06 56.6 97 34.0
RcHm_v2.0_Chr4g0387011 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-06 56.2 84 42.9
Eucgr.H01427 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.9e-06 55.8 91 37.4
FAN04G0386 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.9e-06 55.8 59 52.5
FAN08G0141 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.9e-06 55.8 68 48.5
FAN08G1474 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.9e-06 55.8 92 40.2
C06p34570 Brassica napus HOM05D000005 ORTHO05D010246 5.1e-06 55.5 91 36.3
CsaV3_2G004860 Cucumis sativus L. HOM05D000005 ORTHO05D010497 5.1e-06 55.5 93 37.6
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 5.1e-06 55.5 98 35.7
Eucgr.E03075 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.1e-06 55.5 88 36.4
Eucgr.H01449 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.1e-06 55.5 108 34.3
FvH4_5g39160 Fragaria vesca HOM05D000005 ORTHO05D000294 5.1e-06 55.5 99 35.4
FAN26G0862 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.1e-06 55.5 59 50.8
MD00G1158700 Malus domestica HOM05D000005 ORTHO05D000012 5.1e-06 55.5 136 31.6
Prupe.2G018300 Prunus persica HOM05D000005 ORTHO05D000012 5.1e-06 55.5 89 36.0
C04p46740 Brassica napus HOM05D000005 ORTHO05D010246 6.6e-06 55.1 109 36.7
MELO3C004288.2 Cucumis melo HOM05D000005 ORTHO05D000012 6.6e-06 55.1 62 46.8
Duzib212G0136 Durio zibethinus HOM05D000005 ORTHO05D000012 6.6e-06 55.1 109 31.2
Eucgr.E03065 Eucalyptus grandis HOM05D000005 ORTHO05D011273 6.6e-06 55.1 111 33.3
Eucgr.H02100 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.6e-06 55.1 79 35.4
Prupe.1G162500 Prunus persica HOM05D000005 ORTHO05D000012 6.6e-06 55.1 87 42.5
QL03p000676 Quercus lobata HOM05D000005 ORTHO05D000012 6.6e-06 55.1 66 42.4
RcHm_v2.0_Chr6g0261451 Rosa chinensis HOM05D000005 ORTHO05D000012 6.6e-06 55.1 102 38.2
Eucgr.H01772 Eucalyptus grandis HOM05D000005 ORTHO05D000012 8.7e-06 54.7 125 29.6
HanXRQChr06g0183851 Helianthus annuus HOM05D000005 ORTHO05D000012 8.7e-06 54.7 107 37.4
MD15G1104000 Malus domestica HOM05D000005 ORTHO05D000012 8.7e-06 54.7 99 36.4
RcHm_v2.0_Chr4g0411941 Rosa chinensis HOM05D000005 ORTHO05D015130 8.7e-06 54.7 118 36.4
RcHm_v2.0_Chr6g0261281 Rosa chinensis HOM05D000005 ORTHO05D010497 8.7e-06 54.7 102 37.3


User provided reference genes

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