Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G119900 Carya illinoinensis HOM05D001044 ORTHO05D004551 3.4e-32 141.0 67 100.0
Haze_17451 Corylus avellana HOM05D001044 ORTHO05D004551 3.1e-25 117.9 57 93.0
CiPaw.15G004500 Carya illinoinensis HOM05D001044 ORTHO05D004551 9.0e-25 116.3 57 93.0
Dinv21119 Davidia involucrata HOM05D001044 ORTHO05D004551 1.5e-24 115.5 57 91.2
CiPaw.16G004000 Carya illinoinensis HOM05D001044 ORTHO05D004551 2.0e-24 115.2 57 89.5
Dinv04488 Davidia involucrata HOM05D001044 ORTHO05D004551 3.4e-24 114.4 57 89.5
QL01p044656 Quercus lobata HOM05D001044 ORTHO05D004551 4.5e-24 114.0 57 87.7
Gohir.D13G070600 Gossypium hirsutum HOM05D001044 ORTHO05D004551 5.8e-24 113.6 57 87.7
Gorai.013G080800 Gossypium raimondii HOM05D001044 ORTHO05D004551 5.8e-24 113.6 57 87.7
Duzib251G0949 Durio zibethinus HOM05D001044 ORTHO05D004551 9.9e-24 112.8 57 87.7
MBI12_g36306_MAGBIO Magnolia biondii HOM05D001044 ORTHO05D004551 9.9e-24 112.8 65 80.0
Gohir.A13G053512 Gossypium hirsutum HOM05D001044 ORTHO05D004551 1.3e-23 112.5 57 86.0
TWI79G1043 Tripterygium wilfordii HOM05D001044 ORTHO05D004551 1.7e-23 112.1 57 87.7
Gohir.A13G053498 Gossypium hirsutum HOM05D001044 ORTHO05D004551 2.2e-23 111.7 57 87.7
Gohir.D13G070500 Gossypium hirsutum HOM05D001044 ORTHO05D004551 2.2e-23 111.7 57 87.7
Gorai.013G080700 Gossypium raimondii HOM05D001044 ORTHO05D004551 2.2e-23 111.7 57 87.7
Manes.14G098900 Manihot esculenta HOM05D001044 ORTHO05D004551 2.9e-23 111.3 57 84.2
TWI75G0072 Tripterygium wilfordii HOM05D001044 ORTHO05D004551 2.9e-23 111.3 57 87.7
TWI31G0096 Tripterygium wilfordii HOM05D001044 ORTHO05D004551 3.8e-23 110.9 57 87.7
GSVIVG01011934001 Vitis vinifera HOM05D001044 ORTHO05D004551 3.8e-23 110.9 57 84.2
COL.COLO4_07883 Corchorus olitorius HOM05D001044 ORTHO05D004551 4.9e-23 110.5 57 86.0
Eucgr.B03039 Eucalyptus grandis HOM05D001044 ORTHO05D004551 4.9e-23 110.5 57 86.0
Nn4g23760 Nelumbo nucifera HOM05D001044 ORTHO05D004551 6.4e-23 110.2 57 84.2
Potri.008G117900 Populus trichocarpa HOM05D001044 ORTHO05D004551 8.4e-23 109.8 57 84.2
Potri.019G116100 Populus trichocarpa HOM05D001044 ORTHO05D004551 8.4e-23 109.8 57 84.2
Potri.010G128400 Populus trichocarpa HOM05D001044 ORTHO05D004551 1.1e-22 109.4 57 82.5
Sabra10G0097600 Salix brachista HOM05D001044 ORTHO05D004551 1.1e-22 109.4 57 82.5
THA.LOC104804869 Tarenaya hassleriana HOM05D001044 ORTHO05D004551 1.1e-22 109.4 57 84.2
TAR371G0277 Trochodendron aralioides HOM05D001044 ORTHO05D004551 1.4e-22 109.0 57 84.2
Cpa.g.sc1.207 Carica papaya HOM05D001044 ORTHO05D004551 1.9e-22 108.6 57 86.0
Sabra08G0089400 Salix brachista HOM05D001044 ORTHO05D004551 1.9e-22 108.6 57 80.7
THA.LOC104821955 Tarenaya hassleriana HOM05D001044 ORTHO05D004551 1.9e-22 108.6 57 86.0
Thecc.02G359300 Theobroma cacao HOM05D001044 ORTHO05D004551 3.2e-22 107.8 57 84.2
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 5.4e-22 107.1 57 82.5
AL2G27570 Arabidopsis lyrata HOM05D001044 ORTHO05D004551 7.1e-22 106.7 65 75.4
CANSAT64G1498 Cannabis sativa HOM05D001044 ORTHO05D004551 7.1e-22 106.7 57 84.2
vmacro10540 Vaccinium macrocarpon HOM05D001044 ORTHO05D004551 7.1e-22 106.7 57 82.5
Hma1.2p1_0030F.1_g018340 Hydrangea macrophylla HOM05D001044 ORTHO05D004551 9.3e-22 106.3 57 80.7
Actinidia16627 Actinidia chinensis HOM05D001044 ORTHO05D004551 1.6e-21 105.5 57 82.5
ClCG08G005110 Citrullus lanatus HOM05D001044 ORTHO05D004551 1.6e-21 105.5 61 78.7
TAR371G0896 Trochodendron aralioides HOM05D001044 ORTHO05D004551 1.6e-21 105.5 57 82.5
AT1G68650 Arabidopsis thaliana HOM05D001044 ORTHO05D004551 2.1e-21 105.1 65 73.8
CARHR025940 Cardamine hirsuta HOM05D001044 ORTHO05D004551 2.1e-21 105.1 57 80.7
CARHR061460 Cardamine hirsuta HOM05D001044 ORTHO05D004551 2.1e-21 105.1 57 80.7
MELO3C011548.2 Cucumis melo HOM05D001044 ORTHO05D004551 2.1e-21 105.1 57 82.5
Oeu041891.1 Olea europaea HOM05D001044 ORTHO05D004551 2.7e-21 104.8 59 83.1
CSS0010006 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D004551 3.5e-21 104.4 57 82.5
Carub.0002s1519 Capsella rubella HOM05D001044 ORTHO05D004551 3.5e-21 104.4 57 80.7
Oeu010775.1 Olea europaea HOM05D001044 ORTHO05D004551 3.5e-21 104.4 59 81.4
Atru.chr11.1332 Acer truncatum HOM05D001044 ORTHO05D004551 4.6e-21 104.0 57 78.9
A09p39520 Brassica napus HOM05D001825 ORTHO05D004551 4.6e-21 104.0 58 82.8
BraA09t39451Z Brassica rapa HOM05D001044 ORTHO05D004551 4.6e-21 104.0 58 82.8
PGR102G1529 Punica granatum HOM05D001044 ORTHO05D004551 4.6e-21 104.0 58 82.8
Sed0015668 Sechium edule HOM05D001044 ORTHO05D004551 4.6e-21 104.0 56 80.4
Aa31LG7G8980 Aethionema arabicum HOM05D001044 ORTHO05D004551 6.0e-21 103.6 57 80.7
Rhsim09G0111000 Rhododendron simsii HOM05D001044 ORTHO05D004551 6.0e-21 103.6 57 80.7
Rhsim09G0111100 Rhododendron simsii HOM05D001044 ORTHO05D004551 6.0e-21 103.6 57 80.7
ATR0564G438 Amborella trichopoda HOM05D001044 ORTHO05D004551 7.9e-21 103.2 57 82.5
Actinidia13670 Actinidia chinensis HOM05D001044 ORTHO05D004551 1.0e-20 102.8 57 78.9
CSS0043709 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D004551 1.0e-20 102.8 57 80.7
Duzib248G0223 Durio zibethinus HOM05D001044 ORTHO05D004551 1.0e-20 102.8 57 80.7
PSO017G7358 Papaver somniferum HOM05D001044 ORTHO05D004551 1.0e-20 102.8 57 75.4
BcaB03g12088 Brassica carinata HOM05D001044 ORTHO05D004551 1.3e-20 102.4 58 82.8
A08p27040 Brassica napus HOM05D001044 ORTHO05D004551 1.3e-20 102.4 58 82.8
Sp1g22690 Schrenkiella parvula HOM05D001044 ORTHO05D004551 1.3e-20 102.4 58 82.8
Sp5g23750 Schrenkiella parvula HOM05D001044 ORTHO05D004551 2.3e-20 101.7 57 80.7
AL1G39780 Arabidopsis lyrata HOM05D001044 ORTHO05D004551 3.0e-20 101.3 58 81.0
AUR62035267 Chenopodium quinoa HOM05D001044 ORTHO05D004551 3.0e-20 101.3 57 78.9
Eucgr.G02342 Eucalyptus grandis HOM05D001044 ORTHO05D004551 3.0e-20 101.3 57 77.2
PSO478G3555 Papaver somniferum HOM05D001044 ORTHO05D004551 3.0e-20 101.3 57 71.9
CsaV3_6G003330 Cucumis sativus L. HOM05D001044 ORTHO05D004551 5.1e-20 100.5 53 83.0
BcaC01g01714 Brassica carinata HOM05D001044 ORTHO05D004551 6.7e-20 100.1 56 83.9
C03p72860 Brassica napus HOM05D001044 ORTHO05D004551 6.7e-20 100.1 56 83.9
BolC3t19584H Brassica oleracea HOM05D001044 ORTHO05D004551 6.7e-20 100.1 56 83.9
BraA08t34649Z Brassica rapa HOM05D001044 ORTHO05D004551 6.7e-20 100.1 56 83.9
MSTRG.13509 Avicennia marina HOM05D001044 ORTHO05D004551 8.7e-20 99.8 57 80.7
AUR62002908 Chenopodium quinoa HOM05D001044 ORTHO05D004551 8.7e-20 99.8 57 77.2
Nitab4.5_0006883g0020 Nicotiana tabacum HOM05D001044 ORTHO05D004551 8.7e-20 99.8 57 77.2
Zm00001eb179600 Zea mays HOM05D001044 ORTHO05D004551 8.7e-20 99.8 57 73.7
Cc11_g10470 Coffea canephora HOM05D001044 ORTHO05D004551 1.1e-19 99.4 57 80.7
vmacro10539 Vaccinium macrocarpon HOM05D001044 ORTHO05D004551 1.1e-19 99.4 74 66.2
AT1G25520 Arabidopsis thaliana HOM05D001044 ORTHO05D004551 1.5e-19 99.0 56 82.1
BcaC06g35192 Brassica carinata HOM05D001044 ORTHO05D004551 1.5e-19 99.0 59 78.0
A07p12660 Brassica napus HOM05D001044 ORTHO05D004551 1.5e-19 99.0 59 78.0
C07p18770 Brassica napus HOM05D001825 ORTHO05D002336 1.5e-19 99.0 59 78.0
BolC7t42391H Brassica oleracea HOM05D001044 ORTHO05D004551 1.5e-19 99.0 59 78.0
Carub.0001s2496 Capsella rubella HOM05D001044 ORTHO05D004551 1.5e-19 99.0 56 82.1
Ciclev10032658m.g Citrus clementina HOM05D001044 ORTHO05D004551 1.5e-19 99.0 57 77.2
Sed0017076 Sechium edule HOM05D001044 ORTHO05D004551 1.5e-19 99.0 53 81.1
MSTRG.2253 Avicennia marina HOM05D001044 ORTHO05D004551 1.9e-19 98.6 57 78.9
C05p24940 Brassica napus HOM05D001825 ORTHO05D004551 1.9e-19 98.6 58 81.0
Prupe.1G306900 Prunus persica HOM05D001044 ORTHO05D004551 1.9e-19 98.6 57 75.4
Glyma.10G276300 Glycine max HOM05D001044 ORTHO05D004551 2.5e-19 98.2 57 78.9
arahy.Tifrunner.gnm1.ann1.UC30TE Arachis hypogaea HOM05D001044 ORTHO05D004551 3.3e-19 97.8 57 77.2
CAN.G674.39 Capsicum annuum HOM05D001044 ORTHO05D004551 3.3e-19 97.8 57 77.2
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 3.3e-19 97.8 57 75.4
Glyma.20G113400 Glycine max HOM05D001044 ORTHO05D004551 3.3e-19 97.8 57 78.9
Aqoxy3G00348 Aquilegia oxysepala HOM05D001044 ORTHO05D004551 4.3e-19 97.4 57 73.7
Thhalv10008674m.g Eutrema salsugineum HOM05D001044 ORTHO05D004551 4.3e-19 97.4 56 80.4
RcHm_v2.0_Chr4g0435641 Rosa chinensis HOM05D001044 ORTHO05D004551 4.3e-19 97.4 57 73.7
Sopen05g005510 Solanum pennellii HOM05D001044 ORTHO05D004551 4.3e-19 97.4 57 75.4
PGSC0003DMG400000829 Solanum tuberosum HOM05D001044 ORTHO05D004551 4.3e-19 97.4 57 75.4
FvH4_4g27780 Fragaria vesca HOM05D001044 ORTHO05D004551 5.6e-19 97.1 57 73.7
FAN12G0469 Fragaria x ananassa HOM05D001044 ORTHO05D004551 5.6e-19 97.1 57 73.7
Peaxi162Scf00380g00710 Petunia axillaris HOM05D001044 ORTHO05D004551 5.6e-19 97.1 57 75.4
SalBow8G1991 Salvia bowleyana HOM05D001044 ORTHO05D004551 5.6e-19 97.1 57 77.2
Hund25091 Selenicereus undatus HOM05D001044 ORTHO05D004551 5.6e-19 97.1 57 75.4
EL10Ac6g14462 Beta vulgaris HOM05D001044 ORTHO05D004551 7.4e-19 96.7 57 73.7
Lalb_Chr02g0146111 Lupinus albus HOM05D001044 ORTHO05D004551 7.4e-19 96.7 57 75.4
Nitab4.5_0000672g0130 Nicotiana tabacum HOM05D001044 ORTHO05D004551 7.4e-19 96.7 57 75.4
QL01p044663 Quercus lobata HOM05D001044 ORTHO05D004551 7.4e-19 96.7 57 73.7
arahy.Tifrunner.gnm1.ann1.LE8ECZ Arachis hypogaea HOM05D001044 ORTHO05D004551 9.6e-19 96.3 57 75.4
Solyc05g009690.3 Solanum lycopersicum HOM05D001044 ORTHO05D004551 9.6e-19 96.3 57 73.7
VMungo0720G2569 Vigna mungo HOM05D001044 ORTHO05D004551 9.6e-19 96.3 57 78.9
BcaB03g14050 Brassica carinata HOM05D001044 ORTHO05D004551 1.3e-18 95.9 59 76.3
MD13G1045000 Malus domestica HOM05D001044 ORTHO05D004551 1.3e-18 95.9 57 73.7
MD16G1046300 Malus domestica HOM05D001044 ORTHO05D004551 1.3e-18 95.9 57 73.7
Migut.L01090 Erythranthe guttata HOM05D001044 ORTHO05D004551 2.1e-18 95.1 57 73.7
TPR.G26291 Trifolium pratense HOM05D001044 ORTHO05D004551 2.1e-18 95.1 57 73.7
DCAR_030076 Daucus carota HOM05D001044 ORTHO05D004551 2.8e-18 94.7 57 77.2
Medtr1g111390 Medicago truncatula HOM05D001044 ORTHO05D004551 3.6e-18 94.4 57 75.4
Ca_11192_v3 Cicer arietinum L. HOM05D001044 ORTHO05D004551 4.8e-18 94.0 57 73.7
Thhalv10019088m.g Eutrema salsugineum HOM05D001044 ORTHO05D004551 6.2e-18 93.6 57 73.7
Lj6C762T7 Lonicera japonica HOM05D001044 ORTHO05D004551 6.2e-18 93.6 57 78.9
Lj6C764T4 Lonicera japonica HOM05D001044 ORTHO05D004551 6.2e-18 93.6 57 78.9
Lj5g0018528 Lotus japonicus HOM05D001044 ORTHO05D004551 6.2e-18 93.6 57 71.9
Phvul.007G025300 Phaseolus vulgaris HOM05D001044 ORTHO05D004551 6.2e-18 93.6 57 73.7
BraA07t29044Z Brassica rapa HOM05D001044 ORTHO05D004551 8.1e-18 93.2 66 71.2
Migut.E00316 Erythranthe guttata HOM05D001044 ORTHO05D004551 8.1e-18 93.2 57 71.9
Lalb_Chr06g0166181 Lupinus albus HOM05D001044 ORTHO05D004551 1.1e-17 92.8 57 71.9
Lj3A1018T63 Lonicera japonica HOM05D001044 ORTHO05D004551 1.4e-17 92.4 57 77.2
Psat6g229680 Pisum sativum HOM05D001044 ORTHO05D004551 1.4e-17 92.4 57 73.7
Os08g0433100 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D004551 4.0e-17 90.9 55 70.9
SGA_v2.0_scaffold124G33582 Striga asiatica HOM05D001044 ORTHO05D004551 5.3e-17 90.5 57 71.9
ECA234G3415 Erigeron canadensis HOM05D001044 ORTHO05D004551 9.0e-17 89.7 57 71.9
HanXRQChr08g0214301 Helianthus annuus HOM05D001044 ORTHO05D004551 3.4e-16 87.8 57 73.7
ECA233G1121 Erigeron canadensis HOM05D001044 ORTHO05D004551 4.5e-16 87.4 57 71.9
FAN07G0105 Fragaria x ananassa HOM05D001044 ORTHO05D004551 5.8e-16 87.0 73 57.5
Manes.01G108600 Manihot esculenta HOM05D001044 ORTHO05D004551 9.9e-16 86.3 57 68.4
Lsat_1_v5_gn_8_38801 Lactuca sativa HOM05D001044 ORTHO05D004551 1.3e-15 85.9 57 71.9
Lsat_1_v5_gn_4_18960 Lactuca sativa HOM05D001044 ORTHO05D004551 6.4e-15 83.6 57 70.2
unitig_62.g23718 Utricularia gibba HOM05D001044 ORTHO05D004551 6.4e-15 83.6 57 64.9
Zm00001eb041600 Zea mays HOM05D001044 ORTHO05D004551 6.4e-15 83.6 45 75.6
BcaC05g26445 Brassica carinata HOM05D001044 ORTHO05D004551 8.4e-15 83.2 57 73.7
HanXRQChr16g0529591 Helianthus annuus HOM05D001044 ORTHO05D004551 4.2e-14 80.9 57 66.7
A04p01000 Brassica napus HOM05D001044 ORTHO05D004551 9.3e-14 79.7 44 75.0
CSS0043394 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D004551 9.3e-14 79.7 57 59.6
Pp3c7_800 Physcomitrium patens HOM05D001044 ORTHO05D004551 9.3e-14 79.7 58 69.0
BraA04t15817Z Brassica rapa HOM05D001044 ORTHO05D004551 1.6e-13 79.0 44 72.7
Sc11g0003180 Simmondsia chinensis HOM05D001044 ORTHO05D004551 1.6e-13 79.0 42 81.0
Actinidia15870 Actinidia chinensis HOM05D001044 ORTHO05D004551 2.1e-13 78.6 57 63.2
SEGI_35455 Sequoiadendron giganteum HOM05D001044 ORTHO05D004551 2.7e-13 78.2 43 79.1
BolC5t31223H Brassica oleracea HOM05D001044 ORTHO05D004551 4.6e-13 77.4 41 85.4
Eucgr.J01475 Eucalyptus grandis HOM05D001044 ORTHO05D004551 1.0e-12 76.3 53 64.2
SMO119G0381 Selaginella moellendorffii HOM05D001044 ORTHO05D004551 5.1e-12 73.9 57 63.2
Mapoly0093s0014 Marchantia polymorpha HOM05D001044 ORTHO05D004551 8.7e-12 73.2 60 63.3
SalBow8G2938 Salvia bowleyana HOM05D001044 ORTHO05D004551 2.5e-11 71.6 70 54.3
Eucgr.J01473 Eucalyptus grandis HOM05D001044 ORTHO05D004551 1.3e-10 69.3 52 53.8
SalBow8G2013 Salvia bowleyana HOM05D001044 ORTHO05D004551 1.3e-10 69.3 70 51.4
SalBow8G2850 Salvia bowleyana HOM05D001044 ORTHO05D004551 1.3e-10 69.3 70 51.4
Cc07_g08950 Coffea canephora HOM05D001044 ORTHO05D004551 1.2e-08 62.8 36 75.0
Cre17.g731300 Chlamydomonas reinhardtii HOM05D001044 ORTHO05D004551 2.0e-08 62.0 49 57.1
MCO05G681 Micromonas commoda HOM05D001044 ORTHO05D004551 2.9e-07 58.2 58 51.7
CBR_g49428 Chara braunii HOM05D001044 ORTHO05D004551 2.5e-06 55.1 59 52.5


User provided reference genes

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