Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.8e-70 268.5 134 100.0
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.1e-63 246.5 152 83.6
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.2e-60 236.5 148 83.8
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 4.7e-57 224.6 134 79.9
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.0e-56 223.4 133 78.9
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.3e-56 222.2 133 78.9
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.5e-55 219.5 127 81.1
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 9.8e-55 216.9 130 79.2
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 9.8e-55 216.9 133 77.4
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.3e-54 216.5 133 78.9
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.3e-54 216.5 133 78.9
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 1.7e-54 216.1 130 80.0
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 1.7e-54 216.1 127 79.5
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 2.2e-54 215.7 127 80.3
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 3.7e-54 214.9 134 77.6
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 3.7e-54 214.9 127 79.5
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 4.8e-54 214.5 133 78.2
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 6.3e-54 214.2 127 79.5
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 8.3e-54 213.8 133 75.9
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.1e-53 213.4 127 78.7
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.1e-53 213.4 130 80.0
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.1e-53 213.4 127 78.7
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.4e-53 213.0 127 78.7
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.4e-53 213.0 127 78.7
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.1e-53 211.5 131 77.9
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 5.4e-53 211.1 127 78.0
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 7.0e-53 210.7 131 77.9
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 9.1e-53 210.3 127 78.0
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 9.1e-53 210.3 127 76.4
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.0e-52 209.1 127 76.4
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 2.7e-52 208.8 130 76.2
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 3.5e-52 208.4 127 77.2
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 4.5e-52 208.0 127 76.4
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 4.5e-52 208.0 127 75.6
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.0e-51 206.8 134 74.6
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 1.7e-51 206.1 134 73.9
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 2.9e-51 205.3 127 74.0
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 2.9e-51 205.3 127 73.2
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 3.8e-51 204.9 130 73.8
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 3.8e-51 204.9 124 76.6
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.1e-50 203.4 126 75.4
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 1.1e-50 203.4 130 73.1
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 1.1e-50 203.4 120 77.5
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.5e-50 203.0 126 75.4
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.5e-50 203.0 136 73.5
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.9e-50 202.6 125 76.0
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.9e-50 202.6 126 74.6
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 3.2e-50 201.8 120 76.7
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 4.2e-50 201.4 126 74.6
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 4.2e-50 201.4 126 74.6
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 4.2e-50 201.4 126 74.6
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 4.2e-50 201.4 127 73.2
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 4.2e-50 201.4 127 74.8
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 5.5e-50 201.1 126 74.6
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 5.5e-50 201.1 126 74.6
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 5.5e-50 201.1 126 74.6
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 9.4e-50 200.3 126 74.6
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 9.4e-50 200.3 123 75.6
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.6e-49 199.5 127 72.4
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 3.6e-49 198.4 127 75.6
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.7e-49 198.0 125 72.8
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 8.0e-49 197.2 120 75.8
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.0e-48 196.8 143 67.1
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.4e-48 196.4 133 72.2
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 2.3e-48 195.7 117 77.8
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 3.0e-48 195.3 126 72.2
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 4.0e-48 194.9 126 70.6
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 4.0e-48 194.9 126 71.4
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 5.2e-48 194.5 117 78.6
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.5e-47 193.0 127 74.0
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.5e-47 193.0 127 74.0
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.5e-47 193.0 127 74.0
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.5e-47 193.0 127 74.0
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 2.6e-47 192.2 123 71.5
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 2.6e-47 192.2 117 77.8
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 2.6e-47 192.2 127 71.7
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 3.4e-47 191.8 130 72.3
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 4.4e-47 191.4 136 69.9
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 7.5e-47 190.7 117 75.2
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.3e-46 189.9 117 75.2
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.7e-46 189.5 120 71.7
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.7e-46 189.5 120 71.7
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.7e-46 189.5 113 77.0
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 1.7e-46 189.5 117 74.4
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.7e-46 189.5 125 72.0
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 2.2e-46 189.1 121 72.7
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 2.8e-46 188.7 133 69.2
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 4.9e-46 188.0 119 73.9
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 6.3e-46 187.6 135 69.6
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 8.3e-46 187.2 133 71.4
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 8.3e-46 187.2 117 74.4
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 1.8e-45 186.0 117 72.6
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.4e-45 185.7 127 71.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.6e-44 183.0 125 70.4
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.0e-44 182.6 118 71.2
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.0e-44 182.6 127 70.1
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.7e-44 182.2 127 69.3
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 3.5e-44 181.8 122 69.7
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 5.9e-44 181.0 127 66.9
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 7.7e-44 180.6 125 68.0
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.7e-43 179.5 147 63.3
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.7e-43 179.5 117 72.6
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 6.6e-43 177.6 117 74.4
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.9e-42 176.0 114 71.1
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.2e-41 173.3 116 71.6
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 7.5e-39 164.1 129 59.7
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 2.4e-29 132.5 83 77.1
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 7.8e-28 127.5 88 71.6
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 3.0e-27 125.6 71 80.3
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 5.0e-27 124.8 73 76.7
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 8.6e-27 124.0 68 83.8
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.1e-26 123.6 68 82.4
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.9e-26 122.9 67 83.6
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.3e-24 115.9 112 50.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 6.8e-24 114.4 68 73.5
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 1.2e-23 113.6 112 49.1
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 2.0e-23 112.8 67 70.1
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 2.6e-23 112.5 68 72.1
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 5.8e-23 111.3 77 64.9
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 7.5e-23 110.9 66 86.4
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 9.8e-23 110.5 73 67.1
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.3e-22 110.2 112 47.3
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 7.1e-21 104.4 66 78.8
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 2.1e-20 102.8 66 81.8
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 4.6e-20 101.7 88 62.5
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 5.1e-19 98.2 62 77.4
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 5.1e-19 98.2 114 45.6
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.9e-18 96.3 58 70.7
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.9e-18 96.3 57 80.7
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 2.8e-17 92.4 59 74.6
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.4e-16 90.1 71 62.0
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 4.0e-16 88.6 108 47.2
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 8.9e-16 87.4 79 58.2
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 7.6e-15 84.3 58 69.0
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 1.1e-13 80.5 55 70.9
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 1.4e-13 80.1 53 71.7
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 2.4e-13 79.3 49 75.5
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 4.1e-13 78.6 121 37.2
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 5.4e-13 78.2 53 69.8
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 1.6e-12 76.6 69 53.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 2.8e-09 65.9 46 60.9
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 1.2e-07 60.5 76 44.7


User provided reference genes

Program Settings