Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 7.9e-115 417.2 214 100.0
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 2.0e-78 296.2 213 76.1
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.0e-78 296.2 213 77.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.9e-77 292.4 231 70.6
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 8.5e-77 290.8 213 75.6
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.5e-76 289.3 214 74.3
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 2.5e-76 289.3 230 70.0
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.5e-76 289.3 213 75.6
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.5e-76 289.3 213 73.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 5.5e-76 288.1 215 74.9
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.1e-75 286.2 214 72.0
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.0e-74 283.9 213 73.2
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.3e-74 282.7 214 75.7
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 3.9e-74 282.0 216 74.1
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.7e-74 281.2 214 73.4
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 8.8e-74 280.8 216 73.1
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 2.0e-73 279.6 213 72.3
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.4e-73 278.5 213 72.8
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.3e-72 276.9 216 73.6
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 3.7e-72 275.4 227 69.6
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.1e-71 271.9 209 72.7
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 7.0e-71 271.2 223 70.0
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 9.1e-71 270.8 209 72.7
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 5.0e-69 265.0 214 69.2
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.5e-68 263.5 216 71.3
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 1.9e-68 263.1 229 67.7
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.9e-68 263.1 226 68.1
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 5.5e-68 261.5 215 68.8
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.6e-67 260.0 213 69.5
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.6e-67 260.0 216 68.5
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.1e-67 259.6 269 59.9
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 2.7e-67 259.2 214 69.2
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 4.7e-67 258.5 214 69.2
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 6.1e-67 258.1 246 63.0
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 3.0e-66 255.8 261 61.7
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 4.0e-66 255.4 215 69.8
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 6.7e-66 254.6 216 67.1
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.3e-64 250.4 223 67.7
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.7e-64 250.0 237 65.0
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 1.7e-64 250.0 226 64.2
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 2.8e-64 249.2 227 63.9
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 3.7e-64 248.8 229 64.6
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.1e-63 247.3 223 64.1
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 1.4e-63 246.9 214 66.8
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 4.1e-63 245.4 223 64.1
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 5.3e-63 245.0 233 63.5
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 9.1e-63 244.2 215 67.4
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.2e-62 243.8 247 58.7
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.7e-61 240.0 225 62.2
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.5e-60 236.9 262 56.9
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 1.9e-60 236.5 223 63.2
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.2e-60 235.3 217 63.1
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 5.5e-60 235.0 230 62.2
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.1e-59 233.0 216 61.6
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 2.3e-58 229.6 214 61.7
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.8e-58 228.0 216 61.1
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 2.0e-57 226.5 215 62.8
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.7e-56 223.4 225 60.4
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.4e-55 220.3 267 53.6
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.2e-54 217.2 272 52.6
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 4.5e-54 215.3 215 60.9
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.9e-53 212.6 179 71.5
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 3.8e-53 212.2 173 71.1
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 6.5e-53 211.5 223 57.8
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 8.5e-53 211.1 174 70.1
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 3.2e-52 209.1 214 57.0
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 3.2e-52 209.1 216 58.3
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 4.2e-52 208.8 213 57.7
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.8e-50 201.4 215 59.5
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 9.8e-49 197.6 183 64.5
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.2e-48 196.4 224 54.9
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 3.7e-48 195.7 193 63.7
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.7e-48 195.7 179 65.4
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 4.1e-47 192.2 174 67.2
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 4.1e-47 192.2 184 64.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 7.7e-46 188.0 178 64.6
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 8.6e-45 184.5 217 53.5
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 3.3e-44 182.6 174 66.1
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.5e-44 181.0 92 96.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.2e-43 180.6 92 95.7
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.1e-43 179.9 92 95.7
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 3.6e-43 179.1 221 51.6
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.7e-43 178.7 97 91.8
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 4.7e-43 178.7 92 95.7
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 6.1e-43 178.3 114 79.8
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 6.1e-43 178.3 92 94.6
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.0e-43 177.9 174 63.8
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 4.0e-42 175.6 92 94.6
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 5.2e-42 175.3 93 95.7
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.2e-41 174.1 92 94.6
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 7.5e-41 171.4 92 92.4
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 1.4e-39 167.2 219 52.1
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 5.4e-39 165.2 177 56.5
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-37 160.6 92 88.0
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.3e-37 160.6 92 88.0
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 3.9e-37 159.1 95 90.5
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 7.3e-36 154.8 233 45.5
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.8e-35 152.9 186 58.1
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 2.8e-35 152.9 214 49.1
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 6.2e-35 151.8 157 58.0
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.4e-34 150.6 117 65.0
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 4.0e-34 149.1 242 45.9
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 9.8e-33 144.4 295 40.3
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 8.3e-32 141.4 322 37.9
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.7e-29 133.7 220 43.2
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 2.5e-28 129.8 147 57.8
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 8.1e-27 124.8 100 70.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.4e-26 124.0 107 67.3
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 7.5e-25 118.2 63 90.5
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.3e-24 117.5 178 46.1
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 3.2e-23 112.8 161 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.2e-22 110.9 216 38.0
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 3.5e-22 109.4 288 35.8
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.1e-21 105.5 176 41.5
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 8.6e-21 104.8 124 55.6
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 9.5e-20 101.3 127 53.5
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.4e-18 97.4 52 92.3
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.7e-16 90.5 138 47.8
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.9e-16 89.0 169 38.5
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 1.2e-14 84.3 76 64.5
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 1.2e-14 84.3 76 64.5
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.2e-14 84.3 40 97.5
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 1.0e-13 81.3 121 47.9
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 6.6e-13 78.6 54 74.1
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 6.2e-11 72.0 118 41.5
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.1e-10 71.2 41 85.4
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 1.4e-10 70.9 129 38.8
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.9e-08 63.2 94 44.7
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.9e-08 63.2 42 78.6
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 3.8e-08 62.8 40 75.0
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.2e-07 59.3 35 85.7
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 9.3e-07 58.2 95 43.2
Cc00_g01560 Coffea canephora HOM05D005752 ORTHO05D006959 1.2e-06 57.8 96 45.8


User provided reference genes

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