Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.4e-226 787.3 397 100.0
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.8e-174 615.5 335 93.1
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 9.2e-93 344.7 380 49.7
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.2e-92 344.4 386 48.7
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.9e-91 339.3 389 50.4
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 7.5e-87 325.1 433 46.0
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.0e-80 302.8 385 46.0
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 5.2e-80 302.4 312 51.9
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.0e-79 300.4 378 47.6
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.4e-79 299.3 465 39.4
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 5.8e-79 298.9 342 48.0
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.1e-77 294.7 377 44.8
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.4e-77 294.3 286 53.1
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 2.1e-76 290.4 362 46.4
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.1e-76 290.4 375 45.9
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 3.5e-76 289.7 375 45.9
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 4.6e-76 289.3 375 45.6
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 4.6e-76 289.3 375 45.6
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 7.8e-76 288.5 303 50.8
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.9e-74 283.9 377 45.9
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 5.6e-74 282.3 375 43.7
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 5.6e-74 282.3 390 43.1
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.6e-73 280.8 375 44.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 3.6e-73 279.6 376 43.9
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.6e-73 279.6 298 50.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.4e-72 277.7 461 39.7
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 2.6e-71 273.5 387 42.4
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.4e-71 273.1 376 43.1
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.4e-71 273.1 374 43.6
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.7e-70 270.8 455 38.9
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.8e-70 269.6 377 43.0
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 6.4e-70 268.9 413 40.0
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.6e-68 264.2 392 39.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.1e-68 263.8 422 38.9
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 2.1e-68 263.8 389 40.6
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.7e-67 260.8 452 36.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 3.9e-67 259.6 486 37.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 6.6e-67 258.8 303 47.5
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 6.6e-67 258.8 370 41.1
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 8.7e-67 258.5 457 37.4
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.1e-66 258.1 382 42.9
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-66 257.7 404 39.6
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.5e-66 257.7 428 38.1
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.9e-66 257.3 310 46.1
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.9e-66 257.3 401 40.1
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.9e-66 257.3 401 40.1
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 2.5e-66 256.9 449 37.4
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.5e-66 256.9 461 37.5
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 3.3e-66 256.5 404 40.3
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.3e-66 256.1 411 39.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 5.6e-66 255.8 390 39.5
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 7.3e-66 255.4 318 46.5
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 9.6e-66 255.0 454 37.4
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.1e-65 253.8 448 38.6
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.6e-65 253.1 407 38.6
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 8.1e-65 251.9 382 42.1
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.3e-64 249.2 336 44.3
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 5.3e-64 249.2 456 34.9
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 9.0e-64 248.4 382 42.1
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 9.0e-64 248.4 367 41.1
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 2.6e-63 246.9 448 37.1
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.4e-63 246.5 429 40.6
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.4e-63 246.1 444 35.8
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 5.8e-63 245.7 434 38.0
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.3e-62 244.6 475 35.2
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.7e-62 244.2 344 42.7
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.2e-62 243.8 396 39.4
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.8e-62 243.0 442 37.1
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 3.8e-62 243.0 458 36.5
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 4.9e-62 242.7 434 36.9
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.4e-61 241.1 458 36.2
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.9e-61 240.7 312 44.2
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 2.4e-61 240.4 435 36.6
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.4e-61 239.2 442 36.9
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 9.3e-61 238.4 432 37.0
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.6e-60 237.7 425 36.9
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 4.6e-60 236.1 442 35.1
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 4.6e-60 236.1 450 35.8
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.3e-59 234.6 298 46.3
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.3e-59 234.6 454 36.1
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 2.3e-59 233.8 416 37.7
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 5.1e-59 232.6 313 43.5
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.5e-58 231.1 450 35.1
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.5e-58 231.1 446 35.7
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 9.6e-58 228.4 465 37.2
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.1e-57 227.3 468 34.8
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.8e-57 226.9 469 34.8
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 6.2e-57 225.7 414 37.7
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 6.9e-56 222.2 411 38.7
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.2e-55 221.5 472 35.2
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 2.6e-55 220.3 475 34.9
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 2.6e-55 220.3 410 38.0
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 7.6e-55 218.8 138 77.5
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.3e-54 218.0 295 45.1
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.7e-54 217.6 297 44.4
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.2e-54 217.2 138 76.8
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.4e-54 215.7 292 42.8
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.1e-53 214.9 298 41.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 1.1e-53 214.9 480 32.9
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 3.2e-53 213.4 362 38.1
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 7.1e-53 212.2 362 38.7
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.2e-52 211.5 286 43.4
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.6e-52 211.1 475 32.6
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.3e-51 208.0 369 37.1
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.7e-51 205.7 286 43.0
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.6e-49 201.1 314 40.1
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 6.2e-49 199.1 234 49.6
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 6.2e-49 199.1 234 49.6
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.1e-48 196.8 228 48.7
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.0e-46 191.8 231 46.3
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.7e-46 191.0 355 37.2
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 2.5e-45 187.2 369 36.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.9e-44 182.2 313 39.6
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 3.9e-43 179.9 370 34.3
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.9e-42 177.6 236 46.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.7e-42 176.0 314 37.9
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-41 174.1 236 46.2
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 4.8e-41 172.9 382 33.0
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.2e-41 172.6 314 39.2
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 4.1e-40 169.9 153 56.2
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.5e-39 166.4 388 31.4
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-38 164.9 303 36.0
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.5e-37 160.6 150 54.0
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 3.5e-36 156.8 226 39.4
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 2.2e-33 147.5 395 31.6
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 2.5e-29 134.0 135 51.1
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 4.6e-28 129.8 233 38.6
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.3e-26 123.2 178 41.6
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.1e-24 118.6 191 35.6
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.4e-24 118.2 150 42.0
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 2.0e-23 114.4 174 37.9
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.4e-23 113.6 185 39.5
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.7e-20 104.0 99 48.5
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.7e-20 103.2 113 45.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.0e-19 102.1 121 43.0
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 7.4e-18 95.9 223 31.8
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.2e-17 92.4 166 37.3
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.8e-16 91.3 223 28.7
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 7.7e-15 85.9 201 33.8
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 5.0e-14 83.2 146 37.7
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-13 81.6 116 37.9
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.9e-13 81.3 243 29.6
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 7.2e-13 79.3 72 55.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 6.7e-11 72.8 114 35.1
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 1.3e-06 58.5 42 64.3


User provided reference genes

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