Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 0.0e+00 1714.5 898 100.0
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.4e-117 428.3 758 40.0
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.8e-113 414.1 758 39.2
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.7e-84 317.8 372 49.5
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.8e-83 315.1 876 36.2
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 1.9e-82 311.6 590 39.5
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.1e-77 295.8 1084 27.9
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.2e-73 281.6 394 44.2
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 2.1e-68 265.0 336 46.4
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 7.2e-61 240.0 208 59.1
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 6.1e-60 236.9 254 51.6
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 4.4e-58 230.7 227 54.2
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 6.3e-57 226.9 331 42.6
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 2.4e-56 224.9 215 54.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.6e-55 222.2 374 41.2
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.0e-54 219.5 138 72.5
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.0e-54 219.5 350 41.1
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.0e-54 219.5 357 41.5
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.9e-54 218.0 153 65.4
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-53 216.1 229 50.2
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 3.2e-53 214.5 238 47.9
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.6e-52 212.2 224 49.1
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 2.7e-52 211.5 181 60.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.6e-52 211.1 307 43.0
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 8.0e-52 209.9 179 61.5
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.4e-51 209.1 267 43.4
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.4e-51 209.1 172 58.1
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.0e-51 208.0 351 39.3
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 4.0e-51 207.6 135 70.4
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 4.0e-51 207.6 135 70.4
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 6.8e-51 206.8 426 35.7
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 8.8e-51 206.5 176 60.2
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 8.8e-51 206.5 136 70.6
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 8.8e-51 206.5 307 42.0
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.4e-50 204.5 243 48.1
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.4e-50 204.5 307 41.7
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.4e-50 204.5 230 46.5
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 3.4e-50 204.5 179 59.8
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 5.7e-50 203.8 234 47.0
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 3.7e-49 201.1 181 56.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 4.8e-49 200.7 150 61.3
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 6.3e-49 200.3 356 38.5
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 8.3e-49 199.9 179 58.7
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.1e-48 199.5 390 37.7
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.1e-48 199.5 141 63.8
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.4e-48 198.4 325 41.5
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 3.1e-48 198.0 491 33.4
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 4.1e-48 197.6 234 46.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.4e-48 197.2 366 36.1
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 7.0e-48 196.8 138 61.6
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 7.0e-48 196.8 194 51.0
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 9.1e-48 196.4 168 59.5
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.2e-47 196.1 141 64.5
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.7e-47 194.9 174 56.9
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 3.5e-47 194.5 194 50.5
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 4.5e-47 194.1 255 43.5
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 4.5e-47 194.1 334 37.7
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 5.9e-47 193.7 145 62.1
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.0e-46 193.0 127 70.1
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.7e-46 192.2 249 43.4
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.9e-46 191.4 407 36.4
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 6.6e-46 190.3 487 31.4
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 8.6e-46 189.9 189 50.3
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 8.6e-46 189.9 333 36.6
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.1e-45 189.5 146 58.9
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.5e-45 189.1 428 33.6
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.9e-45 188.7 171 52.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.3e-45 188.0 428 33.4
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 5.5e-45 187.2 127 63.8
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 9.5e-45 186.4 151 55.0
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 9.5e-45 186.4 181 50.3
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-44 186.0 163 54.0
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.6e-44 185.7 150 57.3
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-44 185.7 147 57.8
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 2.8e-44 184.9 160 58.1
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.8e-44 184.9 526 30.6
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 3.6e-44 184.5 281 40.6
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 6.1e-44 183.7 139 58.3
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 8.0e-44 183.3 124 63.7
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.8e-43 182.2 151 56.3
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 3.0e-43 181.4 171 52.0
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 3.0e-43 181.4 171 52.0
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 4.0e-43 181.0 154 53.2
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 8.9e-43 179.9 165 53.9
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.6e-42 178.3 156 55.8
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 4.4e-42 177.6 240 44.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 4.4e-42 177.6 214 43.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 9.8e-42 176.4 128 63.3
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.7e-41 175.6 229 44.1
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 2.2e-41 175.3 153 54.9
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.4e-40 172.6 167 53.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.1e-40 171.0 210 44.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.4e-40 170.6 190 49.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 9.2e-40 169.9 237 40.5
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 9.2e-40 169.9 179 49.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 9.2e-40 169.9 179 49.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 9.2e-40 169.9 179 49.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 9.2e-40 169.9 179 49.7
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.7e-39 168.3 138 57.2
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.5e-39 167.9 138 57.2
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 5.9e-39 167.2 163 52.8
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 7.8e-39 166.8 303 35.0
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.7e-38 165.6 145 53.1
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 6.6e-38 163.7 129 58.9
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.3e-37 160.2 157 53.5
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.2e-36 159.5 157 52.9
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.6e-36 159.1 318 34.9
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 3.6e-36 157.9 132 56.1
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 4.0e-35 154.5 217 41.0
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.2e-34 152.9 140 47.9
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 9.8e-34 149.8 219 40.6
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.3e-33 149.4 229 41.5
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.4e-32 146.0 123 54.5
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 4.1e-32 144.4 191 42.9
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.0e-31 142.1 215 40.0
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.0e-31 142.1 133 51.1
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 4.3e-29 134.4 154 48.7
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 4.7e-28 131.0 107 63.6
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 8.0e-28 130.2 362 31.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.4e-27 129.4 116 50.0
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 6.8e-27 127.1 116 49.1
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 8.9e-27 126.7 84 66.7
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 2.0e-26 125.6 85 64.7
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.3e-25 122.9 117 49.6
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.4e-24 118.6 124 51.6
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.6e-23 115.9 84 58.3
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.0e-22 113.2 105 48.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 8.6e-22 110.2 187 35.8
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 4.7e-20 104.4 81 55.6
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.4e-19 102.8 174 36.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.4e-19 102.8 174 36.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.4e-19 102.8 78 56.4
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.0e-19 101.3 137 44.5
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.2e-16 90.1 76 56.6
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.6e-15 89.4 77 59.7
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.3e-14 85.5 82 53.7
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.5e-13 82.8 206 33.0
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.9e-13 82.4 64 59.4
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.5e-13 82.0 95 52.6
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 7.3e-13 80.5 89 46.1
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.6e-12 79.3 77 48.1
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 6.2e-12 77.4 64 56.2
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 8.1e-12 77.0 65 53.8
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.0e-10 72.4 42 69.0
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 2.6e-10 72.0 63 47.6
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.3e-09 69.7 56 55.4
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 4.9e-09 67.8 73 47.9
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-06 60.1 52 57.7
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 1.7e-06 59.3 91 40.7


User provided reference genes

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