Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 0.0e+00 1482.6 966 100.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.8e-299 1032.7 1035 73.5
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.3e-289 1000.0 1022 72.8
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 7.8e-287 990.7 1046 73.6
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 5.2e-275 951.4 1022 70.7
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.3e-262 909.4 1041 68.9
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 6.6e-262 907.9 1014 67.3
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.6e-252 876.7 839 77.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.6e-250 869.4 1016 67.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.7e-247 859.4 1081 64.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.0e-246 855.9 1046 65.6
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 6.6e-246 854.7 889 74.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 6.2e-244 848.2 1038 62.6
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 4.5e-242 842.0 1037 65.1
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.9e-238 828.9 1024 56.7
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.8e-236 822.8 1012 61.8
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.4e-235 819.7 1023 63.9
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.8e-234 815.1 1017 63.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.0e-233 814.3 1017 63.7
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.0e-231 805.1 1013 63.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.9e-229 800.0 1009 64.8
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 3.7e-228 795.8 1113 58.0
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.1e-227 794.3 893 67.9
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 4.2e-224 782.3 1043 65.0
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.5e-224 781.9 1033 62.1
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.1e-223 780.0 1017 64.3
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 3.0e-222 776.2 1041 63.3
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 8.7e-222 774.6 1030 62.7
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.3e-221 772.3 952 63.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.2e-220 768.1 1029 62.4
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 3.1e-219 766.1 1030 61.6
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 7.7e-218 761.5 920 67.4
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 7.7e-218 761.5 1038 61.3
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 6.5e-217 758.4 1003 58.5
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 9.4e-216 754.6 1042 63.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.2e-215 754.2 1028 61.7
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.2e-215 754.2 1022 60.6
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.1e-215 753.4 1028 60.2
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.1e-215 751.9 1026 61.5
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 6.1e-215 751.9 1000 63.5
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.4e-214 750.7 890 70.2
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-212 744.2 1037 60.7
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.2e-212 743.4 909 67.5
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.4e-211 740.7 840 69.9
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.1e-211 739.6 1034 56.7
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.2e-210 737.6 1011 61.1
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.0e-210 736.9 1011 62.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.4e-210 736.1 910 66.2
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 4.5e-210 735.7 928 66.3
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 6.5e-209 731.9 886 67.4
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.7e-207 726.5 1025 60.3
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.6e-207 726.1 914 66.0
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.9e-206 722.6 891 68.0
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.3e-205 719.5 923 62.0
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 7.4e-205 718.4 1020 59.7
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 9.7e-205 718.0 869 68.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.4e-203 714.1 820 70.7
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.2e-202 711.1 893 66.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 3.5e-202 709.5 992 60.3
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.9e-201 706.4 945 63.5
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.9e-200 703.7 945 63.5
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.2e-200 702.6 909 65.1
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.1e-199 700.3 1022 59.3
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 8.0e-199 698.4 830 67.2
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 8.0e-199 698.4 1030 58.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.0e-198 698.0 926 61.6
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.0e-198 698.0 886 67.2
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.4e-198 697.6 910 65.1
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.2e-197 694.5 1013 59.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.6e-197 693.3 971 61.2
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.3e-197 693.0 939 63.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 4.4e-197 692.6 896 65.2
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.1e-195 688.0 934 62.5
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.1e-195 688.0 900 66.7
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.1e-195 688.0 986 61.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.5e-194 682.6 823 67.7
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 3.8e-193 679.5 940 60.0
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 9.4e-192 674.9 1021 59.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.2e-191 674.5 862 63.2
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.7e-191 673.3 1021 55.3
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 3.6e-191 672.9 1003 58.5
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.4e-190 671.0 1030 58.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.0e-189 667.2 897 63.8
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.6e-189 666.8 959 59.9
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.4e-187 661.0 833 63.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.1e-187 659.8 908 61.2
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.7e-186 656.8 1011 57.5
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 2.7e-186 656.8 1004 57.3
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 3.5e-186 656.4 1010 58.5
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.0e-185 654.8 885 61.0
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 5.0e-185 652.5 1018 57.0
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.5e-184 650.2 1043 57.6
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 6.1e-183 645.6 842 64.3
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 6.1e-183 645.6 1031 53.2
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 8.0e-183 645.2 1021 53.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.0e-182 644.8 1013 55.6
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.3e-180 637.9 916 55.8
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 6.3e-180 635.6 1009 57.0
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 3.1e-179 633.3 900 61.3
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.4e-179 632.5 900 61.2
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 2.0e-178 630.6 1000 57.5
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.9e-178 629.0 1005 56.9
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-177 627.9 906 60.8
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-177 626.3 901 60.9
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 8.6e-177 625.2 1018 56.9
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.6e-176 622.5 906 60.2
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 9.5e-176 621.7 1015 55.5
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 9.5e-176 621.7 871 59.9
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.2e-175 621.3 1000 56.8
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 8.0e-175 618.6 1031 54.1
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 8.0e-175 618.6 913 57.2
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.0e-174 616.7 849 64.2
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 8.9e-174 615.1 849 62.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.3e-172 611.3 1006 56.0
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 5.4e-171 605.9 891 56.6
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 4.6e-170 602.8 891 56.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 4.6e-170 602.8 891 56.6
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.7e-169 600.9 1008 54.8
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 3.0e-169 600.1 808 63.6
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.5e-168 597.0 805 60.4
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 4.3e-168 596.3 1019 54.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 8.0e-167 592.0 774 62.4
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.0e-166 591.7 909 56.7
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.2e-163 580.1 886 59.9
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.6e-162 577.8 982 49.4
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 8.6e-161 572.0 895 57.9
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.2e-156 557.4 792 55.4
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.4e-155 552.7 965 54.9
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-153 547.7 688 69.3
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 5.1e-153 546.2 791 58.7
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 8.6e-153 545.4 713 64.0
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.3e-152 543.5 888 53.7
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 7.3e-152 542.3 794 62.6
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.9e-147 527.7 993 50.9
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.2e-147 526.9 741 59.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.4e-142 510.8 888 51.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 5.2e-142 509.6 897 50.4
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 7.6e-141 505.8 824 57.3
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.3e-140 505.0 950 46.1
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-139 501.5 989 50.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.9e-139 501.1 913 52.8
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 5.4e-139 499.6 897 49.9
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 6.6e-137 492.7 773 52.3
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.9e-136 491.1 963 50.6
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.4e-133 480.3 688 66.1
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 5.4e-131 473.0 483 59.6
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 7.4e-128 462.6 756 54.6
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.4e-118 431.0 691 50.9
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 6.0e-114 416.4 443 59.4
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.3e-111 406.4 925 39.5
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.2e-108 397.9 652 65.2
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.8e-108 397.1 877 49.5
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.1e-106 391.3 489 58.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.3e-104 384.0 413 62.7
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.1e-99 369.0 647 60.6
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-96 358.6 1303 31.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.7e-96 355.9 1002 36.8
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 4.5e-93 347.1 659 51.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.9e-92 344.4 717 46.7
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 3.0e-89 334.3 626 54.5
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.1e-88 332.4 903 33.8
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.4e-83 312.8 645 60.0
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.3e-68 265.8 326 64.1
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 4.0e-57 227.6 259 62.2
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-51 209.5 272 47.4
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.9e-47 194.1 336 42.3
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 3.3e-43 181.4 179 58.7
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 4.9e-39 167.5 123 68.3
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.2e-38 164.9 226 46.0
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 6.2e-34 150.6 88 84.1
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-20 106.3 110 57.3
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 8.1e-18 97.1 152 44.1
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 5.8e-16 90.9 66 69.7
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.0e-12 78.6 62 59.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 3.0e-12 78.6 239 47.7
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 5.1e-12 77.8 119 42.9
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 2.6e-08 65.5 461 24.9
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.9e-07 61.2 63 50.8


User provided reference genes

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