Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.2e-162 575.5 277 100.0
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.3e-117 426.8 279 78.1
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.2e-107 393.7 294 72.1
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 4.7e-104 381.7 268 77.2
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 5.1e-90 335.1 285 65.6
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.4e-84 317.0 284 63.4
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 7.1e-84 314.7 285 63.5
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-83 313.9 285 62.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.3e-82 309.7 285 61.4
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.3e-82 309.7 285 61.4
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 3.0e-82 309.3 288 61.8
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.9e-82 308.9 285 62.5
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.3e-80 303.9 211 74.9
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 6.2e-80 301.6 299 59.5
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 6.2e-80 301.6 285 58.6
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.4e-78 295.8 285 61.8
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.3e-77 293.9 293 60.8
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 8.4e-77 291.2 281 59.4
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.4e-77 291.2 289 58.8
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.9e-76 290.0 308 59.4
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.9e-76 290.0 307 54.4
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 9.6e-73 277.7 287 58.2
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.3e-72 277.3 305 57.0
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.3e-71 271.9 296 55.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 5.3e-71 271.9 291 57.4
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.0e-69 267.7 314 57.0
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.3e-69 267.3 266 60.2
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.9e-69 266.2 291 58.4
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-68 264.2 233 62.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.2e-68 262.7 293 57.3
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 5.5e-68 261.9 295 53.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 5.5e-68 261.9 296 52.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 3.9e-66 255.8 298 54.7
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-65 254.2 326 53.1
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.5e-65 253.1 287 55.1
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 4.3e-65 252.3 229 64.2
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.1e-64 250.0 281 54.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-63 246.9 288 55.9
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.4e-63 246.5 287 54.4
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.3e-63 245.4 342 51.2
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.3e-63 245.4 342 51.2
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.6e-62 243.0 217 64.1
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.0e-61 241.1 349 50.4
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 5.0e-61 238.8 295 51.2
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.5e-60 235.3 222 59.9
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.6e-59 232.6 318 51.3
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 7.9e-59 231.5 270 57.8
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 8.7e-58 228.0 255 52.9
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.5e-57 227.3 266 53.8
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.9e-57 226.9 268 53.7
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 3.3e-57 226.1 293 53.6
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 5.7e-57 225.3 263 55.1
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.4e-55 219.9 300 49.3
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 4.1e-55 219.2 290 50.3
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.0e-55 218.0 341 47.5
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 9.0e-55 218.0 275 53.5
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.4e-54 216.1 272 49.6
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 4.5e-54 215.7 280 50.4
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.2e-53 213.4 269 50.9
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 6.5e-53 211.8 256 56.2
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.9e-52 210.3 249 54.6
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 4.6e-51 205.7 257 51.8
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.8e-50 203.8 286 49.0
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 5.1e-50 202.2 275 49.5
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.1e-50 202.2 291 46.0
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.1e-50 202.2 187 61.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.1e-47 194.5 299 43.5
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 7.7e-46 188.3 268 48.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.1e-44 184.5 233 46.8
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 4.2e-44 182.6 257 50.6
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 4.2e-44 182.6 249 48.6
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 5.5e-44 182.2 229 55.0
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 7.2e-44 181.8 256 50.0
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 9.4e-44 181.4 216 52.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 3.6e-43 179.5 219 53.4
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 7.9e-43 178.3 239 49.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.8e-42 177.2 241 51.9
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.8e-42 177.2 235 50.2
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.3e-42 176.8 254 49.2
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-41 173.7 238 49.2
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.0e-41 173.7 238 49.2
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 5.7e-41 172.2 261 47.5
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 9.7e-41 171.4 237 48.9
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-40 171.0 238 49.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.2e-40 170.2 261 47.1
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.8e-40 169.9 224 50.0
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.7e-40 169.5 261 47.1
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.7e-40 169.5 235 49.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 4.8e-40 169.1 254 46.9
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.8e-39 167.2 231 48.1
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.4e-39 166.8 255 45.9
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.4e-39 166.8 227 47.6
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 4.1e-39 166.0 261 46.0
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 4.1e-39 166.0 235 48.5
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.6e-38 164.1 287 45.6
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 5.9e-38 162.2 240 46.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.3e-37 161.0 219 47.5
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.2e-37 160.2 245 46.5
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 8.5e-37 158.3 305 45.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 8.5e-37 158.3 305 45.6
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 2.5e-36 156.8 216 49.5
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.2e-35 154.5 226 49.1
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 2.1e-35 153.7 239 46.4
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.0e-34 151.4 232 45.7
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 6.7e-34 148.7 213 52.6
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.6e-33 146.7 236 43.6
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 3.3e-33 146.4 201 47.3
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 7.5e-33 145.2 260 43.1
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.2e-32 143.7 147 59.9
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 2.4e-31 140.2 98 74.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 5.3e-31 139.0 237 41.8
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.2e-30 137.9 238 40.3
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.7e-30 136.7 199 49.7
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 5.9e-30 135.6 298 39.6
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 5.9e-30 135.6 244 45.5
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.8e-29 132.9 236 45.8
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.5e-29 132.1 234 44.0
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.1e-28 131.3 75 86.7
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.2e-28 128.6 170 49.4
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.6e-27 126.3 288 36.5
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 6.1e-27 125.6 286 37.4
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.0e-27 125.2 226 40.3
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.0e-26 124.8 222 46.4
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.4e-26 124.4 226 46.5
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.5e-25 120.9 155 49.7
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.6e-25 120.2 82 70.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.7e-25 119.0 153 49.7
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-23 114.4 233 42.9
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.1e-23 113.2 186 45.2
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 9.1e-23 111.7 236 42.4
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.0e-21 108.2 219 40.6
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.7e-21 107.5 226 41.6
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 6.5e-21 105.5 229 41.0
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.9e-20 104.0 215 40.5
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.9e-20 104.0 215 40.5
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 3.2e-20 103.2 232 36.2
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 4.2e-20 102.8 267 35.6
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 7.2e-20 102.1 224 39.3
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 9.5e-20 101.7 210 40.5
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.6e-19 100.9 222 40.5
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.8e-19 100.1 290 33.8
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.4e-18 97.8 224 39.3
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.3e-18 97.1 227 40.1
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 6.8e-18 95.5 185 40.5
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.6e-17 93.6 237 36.7
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 4.4e-17 92.8 173 39.3
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.4e-15 85.9 261 37.5
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 2.9e-13 80.1 89 55.1
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 6.1e-11 72.4 165 35.8
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.3e-10 70.5 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.3e-10 70.5 43 74.4
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.2e-10 69.3 68 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.6e-09 67.0 62 56.5
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 5.7e-09 65.9 42 69.0
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 7.5e-09 65.5 160 37.5
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 8.3e-08 62.0 81 49.4
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 8.3e-08 62.0 65 49.2
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.4e-07 60.5 143 34.3
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.0e-07 58.9 114 40.4
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 2.0e-06 57.4 100 36.0
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 5.9e-06 55.8 151 35.8


User provided reference genes

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