Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G085200 Carya illinoinensis HOM05D008112 ORTHO05D010225 1.6e-55 219.2 109 100.0
Cfa018594 Carpinus fangiana HOM05D008112 ORTHO05D010225 1.2e-26 123.2 110 64.5
Haze_17483 Corylus avellana HOM05D008112 ORTHO05D010225 3.5e-26 121.7 101 66.3
CiPaw.16G065000 Carya illinoinensis HOM05D008112 ORTHO05D010225 8.0e-23 110.5 110 63.6
Prupe.1G311100 Prunus persica HOM05D008112 ORTHO05D010225 3.4e-21 105.1 108 50.0
Glyma.08G262400 Glycine max HOM05D008112 ORTHO05D010225 6.3e-20 100.9 109 53.2
Phvul.003G035700 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 2.4e-19 99.0 110 50.0
Nn3g17844 Nelumbo nucifera HOM05D008112 ORTHO05D010225 1.7e-17 92.8 110 49.1
Thecc.02G230800 Theobroma cacao HOM05D008112 ORTHO05D010225 6.6e-17 90.9 87 56.3
Manes.14G102600 Manihot esculenta HOM05D008112 ORTHO05D010225 8.6e-17 90.5 113 49.6
Potri.008G120800 Populus trichocarpa HOM05D008112 ORTHO05D010225 1.1e-16 90.1 113 52.2
TAR622G0251 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.9e-16 89.4 108 46.3
Potri.010G124900 Populus trichocarpa HOM05D008112 ORTHO05D010225 2.5e-16 89.0 113 50.4
QL01p042495 Quercus lobata HOM05D008112 ORTHO05D010225 3.3e-16 88.6 79 58.2
Manes.06G068400 Manihot esculenta HOM05D008112 ORTHO05D010225 5.6e-16 87.8 113 49.6
RcHm_v2.0_Chr4g0435171 Rosa chinensis HOM05D008112 ORTHO05D010225 5.6e-16 87.8 117 49.6
TPR.G39819 Trifolium pratense HOM05D008112 ORTHO05D010225 5.6e-16 87.8 105 49.5
TAR371G0405 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.2e-15 86.7 108 50.0
Gorai.005G190400 Gossypium raimondii HOM05D008112 ORTHO05D010225 2.1e-15 85.9 109 46.8
Cpa.g.sc1.41 Carica papaya HOM05D008112 ORTHO05D010225 4.7e-15 84.7 110 48.2
Lj2g0015777 Lotus japonicus HOM05D008112 ORTHO05D010225 4.7e-15 84.7 109 48.6
Gohir.D02G169900 Gossypium hirsutum HOM05D008112 ORTHO05D010225 8.0e-15 84.0 109 47.7
Gohir.A03G146800 Gossypium hirsutum HOM05D008112 ORTHO05D010225 3.0e-14 82.0 109 45.9
Medtr1g110820 Medicago truncatula HOM05D008112 ORTHO05D010225 3.0e-14 82.0 111 43.2
Hma1.2p1_0061F.1_g033900 Hydrangea macrophylla HOM05D008112 ORTHO05D010225 5.2e-14 81.3 108 43.5
MELO3C012251.2 Cucumis melo HOM05D008112 ORTHO05D010225 8.9e-14 80.5 88 48.9
FvH4_4g27360 Fragaria vesca HOM05D008112 ORTHO05D010225 1.5e-13 79.7 115 48.7
FAN12G3697 Fragaria x ananassa HOM05D008112 ORTHO05D010225 1.5e-13 79.7 115 48.7
FAN12G3827 Fragaria x ananassa HOM05D008112 ORTHO05D010225 1.5e-13 79.7 115 48.7
Glyma.10G274200 Glycine max HOM05D008112 ORTHO05D010225 2.6e-13 79.0 110 43.6
FAN07G1645 Fragaria x ananassa HOM05D008112 ORTHO05D010225 3.4e-13 78.6 117 45.3
FAN22G0823 Fragaria x ananassa HOM05D008112 ORTHO05D010225 4.4e-13 78.2 116 46.6
Lalb_Chr10g0100011 Lupinus albus HOM05D008112 ORTHO05D010225 7.5e-13 77.4 109 43.1
Atru.chr11.70 Acer truncatum HOM05D008112 ORTHO05D010225 9.8e-13 77.0 121 43.8
TPR.G1513 Trifolium pratense HOM05D008112 ORTHO05D010225 2.2e-12 75.9 111 44.1
Glyma.20G115800 Glycine max HOM05D008112 ORTHO05D010225 8.3e-12 73.9 111 42.3
CSS0024667 Camellia sinensis var. sinensis HOM05D008112 ORTHO05D010225 3.2e-11 72.0 109 40.4
Phvul.007G027300 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 9.2e-11 70.5 111 39.6
Lsat_1_v5_gn_4_17580 Lactuca sativa HOM05D008112 ORTHO05D010225 2.0e-10 69.3 116 44.0
Lalb_Chr17g0342121 Lupinus albus HOM05D008112 ORTHO05D010225 1.3e-09 66.6 107 46.7
Medtr5g056935 Medicago truncatula HOM05D008112 ORTHO05D010225 2.3e-09 65.9 95 42.1
TAR629G1885 Trochodendron aralioides HOM05D008112 ORTHO05D010225 8.6e-09 63.9 84 41.7
Lj5g0021475 Lotus japonicus HOM05D008112 ORTHO05D010225 1.1e-08 63.5 94 41.5
Eucgr.B03015 Eucalyptus grandis HOM05D008112 ORTHO05D010225 1.5e-08 63.2 99 42.4
Ciclev10017355m.g Citrus clementina HOM05D008112 ORTHO05D010225 1.9e-08 62.8 90 41.1
CsaV3_5G034340 Cucumis sativus L. HOM05D008112 ORTHO05D010225 2.5e-08 62.4 86 43.0
Sabra10G0094800 Salix brachista HOM05D008112 ORTHO05D010225 2.5e-08 62.4 95 45.3
Lalb_Chr02g0145981 Lupinus albus HOM05D008112 ORTHO05D010225 5.6e-08 61.2 112 42.9
Dinv34826 Davidia involucrata HOM05D008112 ORTHO05D010225 9.5e-08 60.5 115 35.7
Lalb_Chr06g0166071 Lupinus albus HOM05D008112 ORTHO05D010225 9.5e-08 60.5 94 41.5
Lsat_1_v5_gn_3_59220 Lactuca sativa HOM05D008112 ORTHO05D010225 4.7e-07 58.2 109 38.5
SGA_v2.0_scaffold124G33520 Striga asiatica HOM05D008112 ORTHO05D010225 4.7e-07 58.2 100 36.0
ECA246G3993 Erigeron canadensis HOM05D008112 ORTHO05D010225 1.1e-06 57.0 96 40.6
Sed0024639 Sechium edule HOM05D008112 ORTHO05D010225 1.1e-06 57.0 103 38.8
AT3G25905 Arabidopsis thaliana HOM05D010264 ORTHO05D012423 2.3e-06 55.8 109 35.8
BraA09t39439Z Brassica rapa HOM05D010181 ORTHO05D012280 3.1e-06 55.5 95 35.8
ClCG08G005370 Citrullus lanatus HOM05D038709 ORTHO05D010225 3.1e-06 55.5 90 41.1
Sed0024678 Sechium edule HOM05D038709 ORTHO05D010225 5.2e-06 54.7 49 57.1
A09p39360 Brassica napus HOM05D010181 ORTHO05D012280 6.8e-06 54.3 95 34.7


User provided reference genes

Program Settings