Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 9.1e-248 859.8 426 100.0
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 2.3e-222 775.4 426 90.1
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.6e-220 769.2 426 88.5
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 5.0e-214 747.7 428 86.7
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 8.6e-214 746.9 428 86.7
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 3.6e-212 741.5 443 84.2
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 5.8e-202 707.6 424 81.4
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 2.2e-201 705.7 427 83.4
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 4.1e-200 701.4 423 83.2
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 5.4e-200 701.0 426 80.8
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 2.1e-199 699.1 422 81.5
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 2.1e-199 699.1 429 81.1
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 3.5e-199 698.4 426 81.2
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 1.3e-198 696.4 426 80.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 5.1e-198 694.5 431 79.4
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 5.1e-198 694.5 426 80.8
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 8.7e-198 693.7 426 80.0
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 2.5e-197 692.2 423 79.7
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.2e-196 689.9 426 81.5
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 2.8e-196 688.7 426 81.2
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.8e-196 688.7 426 81.5
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 6.2e-196 687.6 427 79.6
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 6.2e-196 687.6 425 81.6
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 8.1e-196 687.2 430 78.8
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 1.4e-195 686.4 427 79.4
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.8e-195 686.0 425 81.6
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 2.4e-195 685.6 425 80.7
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 3.1e-195 685.3 442 80.3
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 1.5e-194 682.9 429 79.5
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 4.4e-194 681.4 426 81.0
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 4.4e-194 681.4 426 81.2
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 5.8e-194 681.0 426 80.8
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 5.8e-194 681.0 439 80.2
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 7.6e-194 680.6 422 78.7
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 9.9e-194 680.2 430 79.8
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 9.9e-194 680.2 430 79.8
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 1.3e-193 679.9 422 80.8
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.2e-193 679.1 430 79.8
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.8e-193 678.3 427 78.2
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 9.3e-192 673.7 430 79.1
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 2.7e-191 672.2 427 77.8
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 2.7e-191 672.2 429 79.5
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 4.6e-191 671.4 426 77.9
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 4.6e-191 671.4 430 78.4
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 6.0e-191 671.0 426 77.7
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 3.0e-190 668.7 427 79.2
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.0e-190 668.7 374 87.4
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 3.9e-190 668.3 426 77.9
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 6.6e-190 667.5 430 79.1
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 1.5e-189 666.4 433 77.4
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 4.3e-189 664.8 431 76.1
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 5.6e-189 664.5 416 79.6
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 1.3e-188 663.3 425 77.9
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 2.8e-188 662.1 446 74.7
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 2.8e-188 662.1 430 76.5
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 3.6e-188 661.8 423 78.3
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.8e-187 659.4 434 75.3
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 2.4e-187 659.1 424 77.4
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 3.1e-187 658.7 384 84.9
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.2e-186 656.8 424 77.1
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 2.0e-186 656.0 424 77.1
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 2.6e-186 655.6 432 76.9
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 4.5e-186 654.8 426 76.3
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 1.7e-185 652.9 457 75.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 1.1e-184 650.2 439 76.5
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.9e-184 649.4 436 75.5
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.9e-184 649.4 436 75.5
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.4e-184 649.0 461 71.6
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 5.4e-184 647.9 426 77.5
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 5.4e-184 647.9 459 72.3
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 7.1e-184 647.5 378 83.9
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 9.3e-184 647.1 433 75.3
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 2.1e-183 646.0 426 77.5
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 2.7e-183 645.6 491 70.1
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 4.6e-183 644.8 428 75.2
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.0e-182 643.7 381 80.8
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.3e-182 643.3 424 76.9
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 5.1e-182 641.3 428 75.0
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 1.5e-181 639.8 428 76.6
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.9e-181 639.4 422 75.6
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 7.4e-181 637.5 422 75.1
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 7.4e-181 637.5 422 75.8
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 6.2e-180 634.4 422 74.6
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.4e-179 633.3 390 81.3
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 2.0e-178 629.4 382 80.6
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 2.0e-178 629.4 367 82.6
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 2.6e-178 629.0 378 80.2
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 2.6e-178 629.0 385 80.3
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 3.4e-178 628.6 397 79.1
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 9.9e-178 627.1 422 74.6
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 2.9e-177 625.5 424 72.6
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 8.4e-177 624.0 367 82.3
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 8.4e-177 624.0 395 78.0
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.4e-176 622.5 361 83.9
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 4.2e-176 621.7 433 71.8
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 1.6e-175 619.8 367 81.2
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 2.7e-175 619.0 358 84.4
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 4.6e-175 618.2 358 83.5
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 4.6e-175 618.2 358 83.2
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.3e-174 616.7 378 79.1
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 1.3e-174 616.7 378 79.1
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 1.8e-174 616.3 468 68.6
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 7.4e-173 610.9 427 71.4
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 1.3e-172 610.1 383 78.9
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 2.8e-172 609.0 371 80.6
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 2.8e-172 609.0 371 80.6
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 3.7e-172 608.6 358 82.7
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 3.7e-172 608.6 358 82.7
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.2e-170 603.6 423 71.9
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 3.2e-168 595.5 493 64.9
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 5.1e-166 588.2 340 87.1
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 4.2e-160 568.5 358 78.8
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 7.4e-157 557.8 348 79.0
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 2.0e-149 533.1 405 64.9
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 2.6e-149 532.7 426 65.7
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 2.4e-147 526.2 381 67.7
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 7.0e-147 524.6 362 70.2
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 6.5e-145 518.1 337 77.2
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 1.2e-143 513.8 429 65.7
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 1.9e-136 490.0 358 67.0
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 6.1e-135 485.0 309 77.7
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 1.3e-124 450.7 346 62.7
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 2.0e-122 443.4 255 85.1
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 6.6e-121 438.3 365 59.5
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 6.1e-119 431.8 310 71.3
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.0e-117 426.8 310 71.3
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 7.3e-112 408.3 253 81.4
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 1.9e-104 383.6 259 71.0
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.6e-103 380.6 389 54.8
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.3e-100 370.9 262 72.1
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.9e-92 343.2 422 48.3
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 9.5e-88 328.2 178 89.9
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 5.8e-85 318.9 179 88.3
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 2.1e-79 300.4 381 48.6
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.1e-78 296.6 170 86.5
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.6e-71 274.2 205 70.7
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.6e-71 274.2 205 70.7
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 1.6e-58 231.1 159 74.2
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-53 214.9 190 59.5
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.4e-53 213.4 124 81.5
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.8e-47 193.7 128 71.9
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.2e-45 188.3 173 60.7
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 1.9e-35 154.5 90 82.2
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 2.5e-35 154.1 86 84.9
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.5e-35 154.1 182 53.3
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 7.9e-34 149.1 377 30.5
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 2.0e-32 144.4 137 58.4
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 4.8e-31 139.8 77 85.7
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 1.5e-27 128.3 168 46.4
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.2e-27 127.1 121 57.0
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 9.4e-27 125.6 127 53.5
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 4.1e-22 110.2 115 51.3
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 4.4e-16 90.1 50 86.0
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 3.2e-11 73.9 192 29.7
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 3.2e-11 73.9 403 25.1
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 9.4e-11 72.4 39 79.5
Ca_29349_v3 Cicer arietinum L. HOM05D002023 ORTHO05D044259 4.7e-10 70.1 328 27.1
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 3.0e-09 67.4 280 26.8
Phvul.009G122800 Phaseolus vulgaris HOM05D002771 ORTHO05D003078 3.0e-09 67.4 278 24.5
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 6.8e-09 66.2 249 25.3
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 6.8e-09 66.2 325 25.2
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 1.2e-08 65.5 285 26.0
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 2.0e-08 64.7 255 25.9
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 7.5e-08 62.8 249 25.3
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 1.3e-07 62.0 29 93.1
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 1.3e-07 62.0 312 22.8
Cpa.g.sc36.33 Carica papaya HOM05D002771 ORTHO05D003078 1.7e-07 61.6 229 23.6
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 2.8e-07 60.8 191 27.7
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 2.8e-07 60.8 274 23.4
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 3.7e-07 60.5 309 22.3
Mapoly0192s0009 Marchantia polymorpha HOM05D004697 ORTHO05D006015 6.3e-07 59.7 244 23.8
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 1.1e-06 58.9 249 25.3
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 1.1e-06 58.9 254 24.8
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 1.4e-06 58.5 195 27.2
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 1.4e-06 58.5 249 25.3
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 3.1e-06 57.4 249 24.9
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 3.1e-06 57.4 221 25.8
SHI09057 Sapria himalayana HOM05D004678 ORTHO05D005880 3.1e-06 57.4 67 46.3
Ah.01g021080 Amaranthus hybridus HOM05D004697 ORTHO05D006015 5.4e-06 56.6 260 23.1
Lj1A20T48 Lonicera japonica HOM05D002771 ORTHO05D003078 5.4e-06 56.6 233 23.6
Aa31LG1G10790 Aethionema arabicum HOM05D000418 ORTHO05D000317 7.0e-06 56.2 174 27.6
Manes.01G225000 Manihot esculenta HOM05D002771 ORTHO05D003078 7.0e-06 56.2 253 23.3
CAN.G933.13 Capsicum annuum HOM05D002015 ORTHO05D017741 9.1e-06 55.8 57 49.1
ECA236G0232 Erigeron canadensis HOM05D002771 ORTHO05D003078 9.1e-06 55.8 258 23.3
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 9.1e-06 55.8 249 23.3


User provided reference genes

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