Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 0.0e+00 2095.1 1095 100.0
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 0.0e+00 1411.0 1085 70.6
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 0.0e+00 1207.6 1090 64.0
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 0.0e+00 1162.1 1127 61.9
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 8.0e-280 967.6 1096 53.9
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 4.5e-275 951.8 1099 51.8
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 2.7e-267 926.0 1088 52.3
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 8.9e-263 911.0 1089 50.9
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 6.2e-256 888.3 1089 49.1
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 6.2e-256 888.3 1092 49.5
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.8e-255 886.7 1091 49.0
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 4.9e-245 852.0 1092 47.3
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.2e-243 847.4 1092 48.6
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.1e-243 846.7 1092 47.7
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 7.8e-243 844.7 1088 47.8
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.3e-242 844.0 1088 47.9
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 8.6e-242 841.3 1091 48.4
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.5e-241 839.7 1088 47.7
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 4.7e-240 835.5 1077 50.3
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 7.6e-238 828.2 1094 47.4
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 5.1e-234 815.5 1094 48.4
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 2.1e-232 810.1 1056 49.4
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.0e-230 803.5 1079 47.8
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.4e-223 780.8 1104 46.8
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 4.8e-216 755.7 1022 47.7
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.0e-206 723.8 1106 44.0
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 7.6e-206 721.8 1090 44.1
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 1.7e-197 694.1 1100 42.1
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 2.1e-195 687.2 1124 42.5
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 2.7e-195 686.8 1093 43.5
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 5.7e-193 679.1 1129 42.9
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 3.7e-192 676.4 1134 41.8
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.7e-192 676.4 1092 42.8
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.5e-190 671.0 1117 41.4
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.0e-189 668.3 1101 42.3
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.3e-185 653.3 1089 42.1
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 7.7e-182 642.1 1093 41.4
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 5.5e-180 636.0 1095 40.7
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.8e-178 628.6 1097 40.7
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 2.2e-176 624.0 1137 40.3
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 4.5e-174 616.3 1098 41.2
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 2.7e-171 607.1 1094 41.3
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.4e-170 604.7 890 47.2
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.0e-169 600.9 953 44.2
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.7e-168 597.8 1106 40.1
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 5.9e-166 589.3 1127 39.7
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 7.7e-166 589.0 1094 40.8
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.0e-165 588.6 1121 38.1
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.7e-160 571.2 1111 39.3
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 2.8e-160 570.5 1092 39.2
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 1.7e-157 561.2 1102 38.2
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 3.8e-157 560.1 1104 38.2
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 1.5e-156 558.1 1099 38.7
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 8.8e-154 548.9 1105 37.0
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 2.0e-153 547.7 845 43.2
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.3e-149 534.3 1103 37.1
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 7.3e-148 529.3 1124 37.5
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 4.7e-147 526.6 1124 37.1
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 1.0e-146 525.4 1130 37.1
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.7e-144 516.9 1053 37.4
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.1e-140 505.4 1110 36.9
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 3.3e-140 503.8 1110 36.4
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 5.6e-140 503.1 1105 35.6
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.7e-136 491.5 1095 35.1
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 7.0e-135 486.1 1089 36.2
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 2.3e-125 454.5 1062 34.7
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 9.5e-124 449.1 1089 34.7
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 6.8e-122 443.0 863 40.2
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 8.9e-122 442.6 1130 34.0
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.7e-117 428.3 1100 33.5
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 5.8e-113 413.3 1107 32.7
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 5.8e-113 413.3 1105 32.7
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.4e-106 391.3 1093 31.4
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 1.9e-103 381.7 1106 33.5
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.8e-101 375.2 1104 32.0
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 8.7e-101 372.9 1100 31.9
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 5.5e-95 353.6 1089 31.5
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 1.2e-94 352.4 1100 31.6
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 1.8e-93 348.6 1091 29.4
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 8.7e-93 346.3 432 52.5
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 8.7e-93 346.3 1089 29.8
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 3.3e-92 344.4 851 36.5
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 6.9e-90 336.7 1096 31.3
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.4e-87 328.9 1088 30.0
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 1.9e-87 328.6 1103 30.6
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 9.3e-87 326.2 1095 30.5
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 1.2e-86 325.9 371 53.6
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 2.7e-86 324.7 1097 28.5
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 2.7e-86 324.7 1097 28.7
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 1.0e-85 322.8 1101 29.2
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.8e-85 322.0 821 34.5
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 8.7e-85 319.7 1099 28.8
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 1.1e-84 319.3 1093 28.9
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 1.9e-84 318.5 1099 29.2
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.9e-84 318.5 970 29.9
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 1.4e-82 312.4 1099 28.0
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 3.4e-81 307.8 1096 29.0
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 4.5e-81 307.4 1099 28.3
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 3.6e-78 297.7 1089 28.6
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 3.3e-76 291.2 1095 28.9
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 6.7e-69 266.9 1035 30.1
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.6e-65 255.0 1245 26.7
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 6.5e-64 250.4 417 40.0
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 4.2e-63 247.7 227 54.2
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 8.2e-51 206.8 1084 26.6
Atru.chr13.489 Acer truncatum HOM05D006788 ORTHO05D008265 5.3e-50 204.1 415 40.0
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 5.9e-49 200.7 209 48.8
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 5.2e-45 187.6 1073 26.5
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 2.3e-40 172.2 655 31.1
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 2.8e-35 155.2 118 60.2
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 1.2e-25 123.2 1131 23.0
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 3.0e-24 118.6 1123 23.9
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 7.5e-20 104.0 183 35.0
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 8.3e-19 100.5 172 36.0
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 5.0e-16 91.3 964 21.9
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 6.6e-16 90.9 276 31.9
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 2.8e-14 85.5 998 21.6
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.1e-13 83.6 212 35.8
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.1e-13 83.6 222 35.6
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.4e-13 83.2 171 33.3
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.5e-12 79.7 168 33.9
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.5e-12 79.7 245 30.6
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 1.5e-12 79.7 939 22.2
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 3.4e-12 78.6 218 33.9
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 7.5e-12 77.4 973 22.5
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 9.9e-12 77.0 480 24.0
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.3e-11 76.6 218 31.7
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.7e-11 76.3 71 54.9
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 2.9e-11 75.5 209 30.6
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 3.7e-11 75.1 210 28.6
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 4.9e-11 74.7 221 32.1
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.9e-11 74.7 218 31.2
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.1e-10 73.6 242 30.2
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.1e-10 73.6 203 29.6
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.4e-10 73.2 223 31.4
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 1.9e-10 72.8 209 34.4
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 2.4e-10 72.4 216 31.0
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 2.4e-10 72.4 228 29.8
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 3.2e-10 72.0 442 25.1
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 3.2e-10 72.0 204 34.3
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 3.2e-10 72.0 214 34.1
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.2e-10 72.0 230 32.6
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 3.2e-10 72.0 71 47.9
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.1e-10 71.6 229 31.0
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.1e-10 71.6 189 33.9
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 4.1e-10 71.6 209 31.6
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 7.1e-10 70.9 164 32.3
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 7.1e-10 70.9 219 30.6
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 7.1e-10 70.9 206 30.6
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 9.2e-10 70.5 134 38.1
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.2e-10 70.5 187 28.9
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.2e-09 70.1 212 31.1
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.6e-09 69.7 171 29.2
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 1.6e-09 69.7 218 28.9
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 2.7e-09 68.9 934 21.7
SEGI_09114 Sequoiadendron giganteum HOM05D006788 ORTHO05D008265 2.7e-09 68.9 987 22.4
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 4.6e-09 68.2 169 27.8
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 4.6e-09 68.2 950 21.8
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 7.8e-09 67.4 203 30.0
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 1.3e-08 66.6 173 30.6
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.7e-08 66.2 936 21.5
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 1.7e-08 66.2 83 41.0
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 2.3e-08 65.9 456 26.1
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 2.3e-08 65.9 948 21.1
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 5.1e-08 64.7 735 22.6
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 6.6e-08 64.3 474 21.7
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 8.6e-08 63.9 203 28.6
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 8.6e-08 63.9 432 24.8
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 1.1e-07 63.5 275 27.3
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.1e-07 63.5 418 24.4
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 1.1e-07 63.5 192 28.6
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.1e-07 63.5 970 21.2
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.5e-07 63.2 208 30.8
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 1.5e-07 63.2 964 21.0
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.5e-07 63.2 965 22.2
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 1.9e-07 62.8 165 32.7
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.5e-07 62.4 199 28.6
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 9.5e-07 60.5 177 28.8
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 9.5e-07 60.5 968 21.8
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.2e-06 60.1 166 30.1
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.6e-06 59.7 175 25.7
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 3.6e-06 58.5 337 21.7
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 4.7e-06 58.2 397 21.9


User provided reference genes

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