Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 0.0e+00 1147.1 630 100.0
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 7.5e-214 747.7 643 69.5
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.2e-203 713.8 673 65.4
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.0e-202 710.7 659 66.0
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 5.3e-151 538.9 642 53.6
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 1.3e-149 534.3 647 54.4
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 8.7e-146 521.5 606 54.5
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.1e-145 521.2 588 55.8
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 9.6e-145 518.1 597 53.8
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 4.5e-142 509.2 638 52.8
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 3.8e-141 506.1 631 51.7
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 1.1e-140 504.6 637 51.5
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 7.1e-140 501.9 640 52.3
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 3.0e-138 496.5 608 53.1
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 5.1e-138 495.7 686 48.4
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 2.8e-136 490.0 642 51.1
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 1.1e-135 488.0 646 51.1
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 9.0e-135 485.0 641 51.6
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 4.5e-134 482.6 663 50.7
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 2.2e-133 480.3 627 50.4
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 8.4e-133 478.4 627 51.0
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 2.5e-132 476.9 604 50.7
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.2e-131 474.6 606 52.0
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 6.1e-131 472.2 686 48.1
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 3.9e-130 469.5 622 51.9
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 1.6e-128 464.2 651 50.5
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 1.1e-127 461.5 686 47.5
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 5.3e-127 459.1 630 50.6
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 5.3e-127 459.1 638 50.8
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 3.8e-125 453.0 627 50.4
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 7.2e-124 448.7 565 53.3
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 1.2e-123 448.0 686 46.5
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 7.9e-123 445.3 570 52.6
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 1.4e-122 444.5 665 47.1
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 2.3e-122 443.7 637 49.1
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 1.5e-121 441.0 686 46.4
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 7.4e-121 438.7 658 48.8
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 3.7e-120 436.4 608 50.0
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 1.2e-118 431.4 665 45.7
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.2e-118 431.4 593 48.7
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 2.0e-118 430.6 650 47.5
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 1.4e-116 424.5 698 46.0
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 1.4e-116 424.5 644 47.5
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 2.1e-115 420.6 594 48.5
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 1.4e-114 417.9 598 49.3
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 2.3e-114 417.2 659 45.7
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 2.0e-113 414.1 630 45.9
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 2.6e-113 413.7 586 48.6
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 2.6e-113 413.7 615 48.9
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.3e-113 413.3 630 45.7
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 5.3e-111 406.0 649 44.1
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 2.6e-110 403.7 579 48.2
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 4.5e-110 402.9 575 48.5
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.3e-109 401.4 586 47.4
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.5e-108 397.1 582 48.5
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 4.7e-107 392.9 604 46.7
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 4.0e-106 389.8 628 45.9
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 6.7e-106 389.0 649 45.5
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 8.8e-106 388.7 601 45.8
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.0e-105 387.5 584 47.1
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 7.5e-105 385.6 647 45.3
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 8.2e-104 382.1 483 52.2
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 8.2e-104 382.1 579 48.5
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 1.2e-102 378.3 685 42.8
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 3.5e-102 376.7 568 47.0
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.9e-100 370.9 625 43.7
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 4.2e-100 369.8 661 43.1
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.8e-98 364.4 631 45.8
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 5.2e-98 362.8 625 43.0
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 7.5e-97 359.0 612 43.8
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 5.9e-94 349.4 455 50.8
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 1.7e-93 347.8 630 41.3
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.9e-92 344.4 619 43.6
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 5.2e-90 336.3 641 42.0
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.5e-84 318.2 572 43.0
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.5e-84 318.2 572 43.0
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 9.8e-81 305.4 288 60.1
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 2.2e-80 304.3 526 42.2
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 3.7e-80 303.5 561 43.3
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 2.3e-77 294.3 638 38.4
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 4.4e-73 280.0 648 38.4
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 4.9e-72 276.6 538 42.6
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 8.3e-72 275.8 635 38.7
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 8.3e-72 275.8 652 37.9
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 1.0e-69 268.9 651 37.5
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 1.9e-68 264.6 636 38.4
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 1.6e-67 261.5 602 36.4
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 6.2e-67 259.6 522 39.7
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 8.1e-67 259.2 641 36.7
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 8.1e-67 259.2 648 38.1
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 8.1e-67 259.2 648 38.1
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 1.4e-66 258.5 623 37.9
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 6.8e-66 256.1 647 37.6
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.5e-65 255.0 449 41.2
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 2.0e-65 254.6 664 36.3
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 5.8e-65 253.1 647 36.8
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 8.3e-64 249.2 635 36.4
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 2.4e-63 247.7 582 38.1
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 1.6e-62 245.0 641 34.8
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 6.8e-58 229.6 605 35.9
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 3.2e-55 220.7 652 34.0
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 6.6e-53 213.0 637 32.8
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.9e-52 211.5 381 43.3
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.2e-49 202.2 637 33.4
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 2.0e-49 201.4 614 32.4
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.6e-30 138.7 625 28.3
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 3.5e-30 137.5 388 33.2
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 2.3e-29 134.8 197 45.2
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 9.0e-26 122.9 505 29.3
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 4.5e-25 120.6 251 39.0
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.1e-23 115.9 576 28.5
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.1e-23 115.9 576 28.5
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 5.7e-20 103.6 178 45.5
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.9e-15 88.6 124 50.8
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 5.7e-12 77.0 127 48.8
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 1.6e-06 58.9 151 34.4


User provided reference genes

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