Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.9e-127 459.1 229 100.0
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 6.9e-125 450.7 229 96.9
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 96.1
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 5.8e-124 447.6 229 96.1
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 96.9
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 95.6
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.3e-123 446.4 229 96.1
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 95.2
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 95.2
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 94.8
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 8.4e-123 443.7 226 96.0
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 8.4e-123 443.7 226 96.0
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 8.4e-123 443.7 228 95.6
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.1e-122 443.4 227 95.6
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 95.2
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 94.8
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 94.8
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 94.3
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 94.3
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 94.8
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.2e-122 441.8 226 95.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 95.2
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 93.9
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 94.8
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 93.4
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 94.8
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 3.5e-121 438.3 227 94.3
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 3.5e-121 438.3 227 93.8
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 4.6e-121 438.0 227 93.4
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 4.6e-121 438.0 227 93.4
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 93.0
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 92.6
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 93.0
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 93.4
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 92.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 93.0
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 2.3e-120 435.6 229 92.1
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.3e-120 435.6 227 93.8
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 91.7
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 5.1e-120 434.5 227 93.4
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 93.4
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 5.1e-120 434.5 227 93.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 92.5
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 93.4
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 92.1
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 92.5
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.1e-119 433.3 229 91.3
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.5e-119 433.0 229 90.8
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.9e-119 432.6 227 91.6
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.3e-119 431.8 229 92.1
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 3.3e-119 431.8 227 92.5
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 5.6e-119 431.0 229 91.3
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 7.3e-119 430.6 229 91.7
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.6e-118 429.5 227 92.1
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 4.8e-118 427.9 229 91.3
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 4.8e-118 427.9 228 91.7
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 2.4e-117 425.6 220 93.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 3.1e-117 425.2 229 90.4
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 4.0e-117 424.9 229 90.4
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 4.0e-117 424.9 227 89.9
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 5.3e-117 424.5 229 90.0
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.2e-116 423.3 229 90.4
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.5e-116 422.9 228 90.4
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.5e-116 422.9 229 89.5
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.3e-115 419.9 229 87.8
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 2.2e-115 419.1 227 88.5
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 3.8e-115 418.3 227 89.9
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 90.8
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 88.5
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 8.4e-115 417.2 231 88.7
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.9e-114 416.0 231 88.3
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 89.0
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 89.0
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 89.0
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 89.0
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 89.0
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 5.4e-114 414.5 227 88.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.6e-113 412.9 229 87.3
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 88.6
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 85.9
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.7e-113 412.1 226 86.3
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 87.2
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 7.9e-113 410.6 226 86.3
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 85.5
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 87.2
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 3.9e-112 408.3 228 86.4
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.1e-112 407.9 227 86.3
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 5.1e-112 407.9 236 85.6
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 86.3
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 86.3
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 86.3
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.1e-111 406.8 229 89.5
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 3.3e-111 405.2 227 85.9
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.3e-110 403.3 227 85.9
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.3e-110 403.3 227 84.6
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 6.2e-110 401.0 254 79.5
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 3.1e-109 398.7 228 84.2
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 4.9e-107 391.3 204 94.1
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 2.1e-105 386.0 201 94.0
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 7.9e-105 384.0 202 92.6
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.5e-103 379.0 229 82.5
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 7.4e-103 377.5 201 92.0
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.3e-102 376.7 229 78.6
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.4e-101 372.5 227 77.1
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 9.0e-101 370.5 191 96.3
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.5e-100 369.8 190 96.3
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.0e-100 369.4 229 76.0
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.0e-100 369.4 229 76.0
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.0e-99 367.1 190 94.2
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 1.0e-99 367.1 210 82.4
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 4.2e-98 361.7 197 90.4
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 4.2e-98 361.7 233 79.8
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 9.3e-98 360.5 229 72.9
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 9.3e-98 360.5 200 88.5
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.2e-97 360.1 247 74.9
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 5.1e-96 354.8 191 90.6
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 185 95.1
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 7.4e-95 350.9 187 92.5
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-94 349.7 227 75.8
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 4.8e-94 348.2 228 71.5
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 6.3e-94 347.8 229 77.3
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 3.6e-89 332.0 185 86.5
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.8e-88 329.7 226 73.0
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.0e-83 313.9 162 95.1
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 2.9e-83 312.4 164 93.3
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 4.4e-79 298.5 355 49.3
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.0e-75 285.0 160 85.0
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.5e-68 262.3 160 75.6
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.9e-59 232.6 122 91.8
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 4.2e-58 228.8 154 70.1
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.8e-56 221.1 131 77.9
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.1e-37 159.1 135 60.7
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.6e-28 130.6 69 91.3
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 5.8e-23 112.1 62 77.4
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 7.8e-20 101.7 124 50.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 8.6e-19 98.2 152 41.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.6e-15 86.7 45 84.4
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 3.4e-15 86.3 81 54.3
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 63 57.1
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 3.5e-12 76.3 79 49.4
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 6.0e-12 75.5 49 75.5
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 5.6e-10 68.9 82 51.2
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 1.3e-06 57.8 26 96.2


User provided reference genes

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