Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 0.0e+00 2781.9 1373 100.0
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 0.0e+00 1768.1 1386 65.7
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 0.0e+00 1708.3 1452 62.0
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 0.0e+00 1644.4 1410 62.2
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 0.0e+00 1374.4 1411 53.4
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 0.0e+00 1354.0 1387 52.1
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 0.0e+00 1304.3 1409 51.2
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 0.0e+00 1283.9 1396 50.1
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 0.0e+00 1266.9 1411 49.8
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1264.2 1407 49.8
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 0.0e+00 1262.7 1390 49.8
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1256.1 1413 49.5
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1220.3 1439 48.4
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 0.0e+00 1215.3 1417 47.5
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1186.8 1398 47.3
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 0.0e+00 1161.4 1237 51.5
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 0.0e+00 1154.0 1427 47.0
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 0.0e+00 1133.2 1402 48.0
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 0.0e+00 1132.9 1395 46.7
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 0.0e+00 1103.2 1405 44.4
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 0.0e+00 1087.0 1413 44.7
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 6.6e-308 1061.2 1412 45.6
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 5.3e-305 1051.6 1427 44.4
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 1.9e-302 1043.1 1403 43.2
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 4.2e-302 1042.0 1405 43.2
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 9.3e-302 1040.8 1401 44.0
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 6.0e-301 1038.1 1352 43.6
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 9.6e-299 1030.8 1396 43.9
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 1.7e-295 1020.0 1398 43.6
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 2.9e-287 992.6 1426 41.4
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 3.8e-287 992.3 1360 43.9
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 2.1e-285 986.5 1397 42.3
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 7.9e-285 984.6 1401 42.4
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 3.2e-278 962.6 1409 42.2
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 6.1e-277 958.4 1409 42.1
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 3.1e-273 946.0 1403 41.6
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 1.7e-271 940.3 1417 41.1
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 2.9e-271 939.5 1404 39.6
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 3.6e-269 932.6 1410 40.5
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 4.7e-269 932.2 1392 40.2
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 3.3e-267 926.0 1410 42.1
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.8e-265 920.2 1401 40.8
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.2e-264 917.5 1222 44.6
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.2e-261 907.5 1398 39.8
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 7.0e-257 891.7 1399 39.8
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.7e-255 887.1 1399 39.8
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 5.0e-247 859.0 1407 38.6
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 1.4e-244 850.9 1368 37.8
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 3.7e-242 842.8 1398 38.1
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 5.4e-241 839.0 1344 37.6
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 4.5e-240 835.9 1432 38.6
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 2.3e-239 833.6 1385 37.5
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.8e-236 823.9 1358 38.5
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 1.5e-235 820.8 1394 37.7
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 1.8e-233 813.9 1396 37.1
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 2.4e-233 813.5 1402 37.8
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 1.0e-228 798.1 1189 40.1
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 3.4e-227 793.1 1404 36.3
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 8.3e-226 788.5 1180 39.3
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 6.6e-223 778.9 1396 37.2
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 6.6e-223 778.9 1390 36.8
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 1.6e-221 774.2 1412 37.1
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.8e-220 770.8 1147 40.7
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 4.0e-220 769.6 1397 37.0
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.6e-219 766.9 1405 35.9
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 3.4e-219 766.5 1389 37.2
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 5.8e-219 765.8 1389 36.8
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 9.8e-219 765.0 1387 37.1
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 9.8e-219 765.0 1399 37.0
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.9e-217 760.8 1393 37.1
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 7.1e-217 758.8 1388 36.3
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.2e-216 758.1 1377 35.4
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.1e-212 745.0 1281 36.2
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 9.6e-206 721.8 1387 36.3
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 9.9e-203 711.8 1235 38.0
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 3.5e-200 703.4 1522 32.6
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 3.6e-197 693.3 1017 42.8
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 9.0e-196 688.7 831 47.1
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 3.4e-195 686.8 1478 34.3
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 7.6e-195 685.6 971 42.7
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.1e-188 665.2 1087 39.2
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 4.5e-155 553.5 933 37.8
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 3.1e-148 530.8 1414 31.0
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 8.5e-146 522.7 1390 29.9
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 1.3e-141 508.8 1383 28.9
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 1.0e-127 462.6 819 37.1
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 3.3e-121 441.0 481 50.9
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 2.0e-118 431.8 420 53.6
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 9.2e-116 422.9 632 40.5
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 1.0e-114 419.5 405 52.3
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.4e-108 399.1 363 57.0
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 6.6e-98 363.6 453 42.8
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.7e-93 349.0 378 48.9
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.3e-89 334.7 363 51.0
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.4e-86 324.3 279 58.4
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 9.9e-86 323.2 840 31.2
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-75 289.3 256 57.0
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.3e-74 285.4 344 47.1
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 3.0e-74 285.0 420 41.2
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 1.4e-71 276.2 377 42.2
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 9.9e-70 270.0 1333 24.4
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 9.3e-68 263.5 274 51.8
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 2.6e-62 245.4 600 31.7
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 5.8e-62 244.2 474 33.5
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 6.5e-61 240.7 656 29.6
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.7e-57 227.6 215 54.4
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 3.4e-54 218.4 403 38.0
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.4e-47 196.4 676 24.7
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 4.1e-47 194.9 506 30.0
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.2e-46 193.4 195 47.7
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 7.7e-46 190.7 277 41.5
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 2.5e-44 185.7 525 26.5
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 5.7e-41 174.5 122 69.7
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 3.8e-29 135.2 606 24.8
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 8.5e-29 134.0 212 40.1
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 1.1e-28 133.7 169 43.8
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 9.7e-25 120.6 276 35.5
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.2e-24 119.4 179 40.2
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.8e-23 116.3 268 31.3
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.0e-21 110.5 215 35.3
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 4.0e-18 98.6 57 75.4
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 3.4e-17 95.5 289 27.0
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 2.7e-14 85.9 51 72.5
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 2.1e-11 76.3 551 22.3
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 4.4e-09 68.6 295 26.1
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 2.2e-08 66.2 66 47.0
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 7.8e-06 57.8 201 25.9


User provided reference genes

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