Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.0e-210 736.5 369 100.0
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.1e-180 636.7 371 84.6
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.6e-176 621.7 426 74.4
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 5.1e-170 601.3 371 79.8
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 8.1e-168 594.0 355 81.7
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 3.1e-167 592.0 371 80.3
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.4e-166 588.6 371 78.4
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 5.8e-166 587.8 354 78.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.1e-164 583.6 354 78.0
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.9e-164 582.8 371 79.0
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 4.2e-164 581.6 362 76.8
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.7e-163 578.9 355 79.7
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 6.0e-163 577.8 366 76.2
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 7.8e-163 577.4 358 78.5
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 3.3e-161 572.0 358 77.9
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.6e-161 570.5 361 76.5
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 9.6e-161 570.5 368 74.2
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.6e-160 569.7 357 76.5
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-160 569.7 361 76.5
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 4.7e-160 568.2 359 75.5
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.8e-159 566.2 358 77.4
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.4e-159 565.8 366 75.4
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-159 565.1 361 75.9
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 3.8e-157 558.5 365 74.5
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 4.9e-157 558.1 370 74.1
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 6.4e-157 557.8 365 74.5
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.1e-156 557.0 358 75.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.1e-156 557.0 359 74.1
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 5.4e-156 554.7 363 73.3
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 5.4e-156 554.7 363 75.8
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.4e-156 554.7 367 74.1
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-155 553.1 359 74.1
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.1e-155 552.7 369 72.4
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.7e-155 552.4 358 74.6
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.5e-155 552.0 365 74.0
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 6.0e-155 551.2 365 73.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 6.0e-155 551.2 365 74.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.0e-154 550.4 358 74.3
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.3e-154 549.3 365 72.9
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 2.3e-154 549.3 371 73.0
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 8.7e-154 547.4 358 73.5
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.5e-153 546.6 365 73.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.5e-153 545.8 358 72.9
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.5e-153 545.8 356 73.9
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 5.6e-153 544.7 368 70.4
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 7.3e-153 544.3 364 72.8
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 7.3e-153 544.3 364 72.8
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 9.6e-153 543.9 371 72.8
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.3e-152 543.5 358 73.2
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 6.2e-152 541.2 370 73.0
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.1e-151 540.4 358 72.1
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 1.4e-151 540.0 358 72.1
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.4e-151 540.0 366 74.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.8e-151 539.7 358 72.1
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.8e-151 539.7 365 74.8
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 3.1e-151 538.9 361 72.0
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 6.9e-151 537.7 356 73.9
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 9.0e-151 537.3 358 72.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 9.0e-151 537.3 360 73.1
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.2e-150 537.0 365 71.8
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.2e-150 537.0 385 69.1
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.2e-150 537.0 363 71.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.0e-150 536.2 356 73.3
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.6e-150 535.8 356 73.3
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 4.5e-150 535.0 357 73.4
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 5.8e-150 534.6 365 72.3
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 9.9e-150 533.9 365 70.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 3.8e-149 531.9 322 79.2
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 3.8e-149 531.9 357 72.3
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.4e-148 530.0 348 73.6
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.2e-147 526.9 363 70.0
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.1e-147 526.2 305 84.9
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.1e-147 526.2 367 70.0
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.0e-146 523.9 363 71.3
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.8e-146 523.1 390 68.5
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.9e-145 519.6 355 70.7
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 5.6e-145 518.1 359 70.2
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.6e-144 516.5 367 68.4
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.8e-144 515.0 357 72.3
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 6.2e-144 514.6 365 69.0
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.1e-143 512.3 375 69.9
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.0e-142 509.6 358 71.2
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.6e-142 509.2 381 65.6
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.3e-141 506.9 381 65.4
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.4e-141 504.6 381 65.1
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 6.4e-141 504.6 356 68.0
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.9e-140 503.1 396 66.2
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.1e-139 499.6 358 68.7
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.1e-138 495.0 347 68.9
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.5e-137 493.4 358 69.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 2.5e-137 492.7 358 69.6
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 2.5e-137 492.7 358 69.6
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 2.5e-137 492.7 312 74.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 7.6e-134 481.1 358 66.8
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.1e-132 477.2 320 70.9
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.5e-132 476.1 356 66.6
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 2.1e-131 473.0 292 78.1
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 7.9e-131 471.1 354 63.3
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.3e-130 470.3 372 64.0
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 8.7e-130 467.6 298 76.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.9e-129 466.5 359 66.3
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.3e-128 463.8 356 64.6
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 5.3e-127 458.4 373 61.4
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.5e-126 455.3 354 65.5
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 7.2e-124 448.0 292 74.0
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.7e-120 436.8 331 65.3
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.8e-120 436.0 292 70.9
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.8e-119 433.3 304 71.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-116 422.5 381 59.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 6.5e-109 398.3 358 60.1
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.6e-105 386.3 356 57.6
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.6e-105 386.3 273 68.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.3e-104 384.0 358 58.9
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.2e-102 377.5 354 56.8
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 6.5e-101 371.7 287 61.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.2e-99 367.5 357 50.7
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.1e-99 366.7 356 56.5
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 6.1e-99 365.2 362 50.8
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 3.7e-96 355.9 364 54.1
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.1e-95 354.4 314 52.2
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 7.7e-94 348.2 340 50.6
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 3.8e-93 345.9 388 45.6
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.5e-92 343.2 270 64.8
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 7.1e-63 245.4 152 73.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 7.6e-57 225.3 328 38.1
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.6e-53 212.2 136 71.3
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 3.9e-45 186.4 374 31.3
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 9.6e-44 181.8 125 72.8
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.1e-37 159.5 140 57.1
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.9e-34 149.1 105 73.3
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.2e-33 148.3 339 32.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.8e-32 143.3 138 53.6
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.4e-32 142.1 85 77.6
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-31 141.7 85 77.6
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 5.4e-31 139.4 122 63.1
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.3e-31 138.7 83 78.3
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.3e-31 138.7 199 41.7
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.6e-30 136.3 86 75.6
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-24 118.6 78 73.1
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.8e-24 116.7 77 72.7
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.8e-24 116.7 77 72.7
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.8e-24 116.7 73 75.3
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-23 115.2 77 71.4
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-23 114.8 77 71.4
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-23 113.6 73 72.6
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.1e-23 112.5 350 24.9
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 9.3e-23 112.1 80 71.2
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.3e-23 112.1 72 73.6
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-22 111.7 76 68.4
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.5e-22 110.2 87 70.1
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.9e-22 109.0 73 69.9
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 3.9e-21 106.7 104 60.6
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.1e-21 106.3 100 58.0
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 5.1e-21 106.3 110 48.2
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.9e-20 104.4 110 48.2
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 6.2e-19 99.4 73 67.1
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 3.8e-16 90.1 74 70.3
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-15 86.7 50 82.0
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 9.3e-15 85.5 45 86.7
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.8e-13 81.3 54 74.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.8e-11 73.9 89 48.3
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 4.5e-09 66.6 46 69.6
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.5e-08 62.8 42 76.2
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.4e-07 61.6 49 55.1
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 2.5e-07 60.8 37 81.1
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.2e-07 60.5 49 55.1
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 3.2e-07 60.5 49 55.1
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.2e-07 60.1 37 64.9
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.2e-07 60.1 37 64.9
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.2e-07 59.3 49 53.1
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.4e-07 58.9 37 62.2
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.2e-06 58.5 50 64.0
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.2e-06 58.5 37 62.2
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.2e-06 58.5 37 64.9
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 1.6e-06 58.2 67 55.2
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 1.6e-06 58.2 67 55.2
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-06 57.4 36 77.8
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 2.7e-06 57.4 37 62.2
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 7.9e-06 55.8 36 72.2


User provided reference genes

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