Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G058400 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.7e-45 184.5 92 100.0
CiPaw.15G058100 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.2e-41 171.0 92 92.4
CiPaw.15G058600 Carya illinoinensis HOM05D000955 ORTHO05D001429 9.4e-41 169.9 92 91.3
CiPaw.15G058800 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.3e-39 165.2 92 89.1
Cfa018543 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.9e-18 95.1 78 57.7
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 9.5e-17 90.1 74 52.7
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 3.5e-11 71.6 71 49.3
COL.COLO4_26501 Corchorus olitorius HOM05D000955 ORTHO05D001429 7.8e-11 70.5 65 52.3
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 1.0e-10 70.1 75 46.7
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 2.3e-10 68.9 79 43.0
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 3.8e-10 68.2 81 42.0
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 6.6e-10 67.4 79 41.8
Atru.chr13.674 Acer truncatum HOM05D000955 ORTHO05D001429 8.6e-10 67.0 69 47.8
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.1e-09 66.6 70 47.1
Dinv29919 Davidia involucrata HOM05D000955 ORTHO05D001429 1.5e-09 66.2 67 47.8
Manes.18G036200 Manihot esculenta HOM05D000955 ORTHO05D001429 1.5e-09 66.2 78 41.0
Thecc.08G009300 Theobroma cacao HOM05D000955 ORTHO05D001429 1.5e-09 66.2 66 45.5
CiPaw.15G059300 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.9e-09 65.9 76 39.5
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 1.9e-09 65.9 95 36.8
COL.COLO4_17164 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.5e-09 65.5 83 39.8
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 2.5e-09 65.5 77 42.9
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 3.3e-09 65.1 78 42.3
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 5.6e-09 64.3 73 45.2
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 5.6e-09 64.3 77 39.0
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 5.6e-09 64.3 71 42.3
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 7.3e-09 63.9 71 43.7
Thecc.04G032100 Theobroma cacao HOM05D000955 ORTHO05D001429 7.3e-09 63.9 70 44.3
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 9.5e-09 63.5 78 42.3
Gohir.D01G107400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 9.5e-09 63.5 76 40.8
Gorai.002G131800 Gossypium raimondii HOM05D000955 ORTHO05D001429 9.5e-09 63.5 76 40.8
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 9.5e-09 63.5 75 42.7
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.2e-08 63.2 75 41.3
ClCG05G019800 Citrullus lanatus HOM05D000955 ORTHO05D001429 1.2e-08 63.2 82 40.2
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 1.2e-08 63.2 82 40.2
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.6e-08 62.8 75 42.7
Gohir.A01G119200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.6e-08 62.8 76 39.5
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 1.6e-08 62.8 72 40.3
CSS0008676 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.1e-08 62.4 75 41.3
MELO3C016745.2 Cucumis melo HOM05D000955 ORTHO05D001429 2.1e-08 62.4 82 39.0
CSS0046588 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.8e-08 62.0 75 41.3
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.8e-08 62.0 78 39.7
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.8e-08 62.0 77 40.3
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.8e-08 62.0 66 47.0
Manes.18G036400 Manihot esculenta HOM05D000955 ORTHO05D001429 2.8e-08 62.0 69 42.0
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 2.8e-08 62.0 68 42.6
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 2.8e-08 62.0 66 43.9
Atru.chr13.684 Acer truncatum HOM05D000955 ORTHO05D001429 3.6e-08 61.6 67 44.8
CSS0027110 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.6e-08 61.6 75 41.3
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.6e-08 61.6 69 43.5
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.6e-08 61.6 68 44.1
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 3.6e-08 61.6 69 44.9
Manes.18G036300 Manihot esculenta HOM05D000955 ORTHO05D001429 3.6e-08 61.6 71 40.8
Sc15g0003450 Simmondsia chinensis HOM05D000955 ORTHO05D001429 3.6e-08 61.6 71 42.3
Thecc.04G031300 Theobroma cacao HOM05D000955 ORTHO05D001429 3.6e-08 61.6 78 39.7
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.7e-08 61.2 69 43.5
QL02p005235 Quercus lobata HOM05D000955 ORTHO05D001429 4.7e-08 61.2 77 39.0
CsaV3_4G034250 Cucumis sativus L. HOM05D000955 ORTHO05D001429 6.1e-08 60.8 82 40.2
Lsat_1_v5_gn_4_125200 Lactuca sativa HOM05D000955 ORTHO05D001429 6.1e-08 60.8 67 44.8
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 6.1e-08 60.8 75 41.3
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.0e-08 60.5 66 47.0
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.0e-08 60.5 66 47.0
CSS0009132 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.0e-07 60.1 68 42.6
CSS0049247 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.0e-07 60.1 75 40.0
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 1.0e-07 60.1 76 38.2
Potri.014G030100 Populus trichocarpa HOM05D000955 ORTHO05D001429 1.0e-07 60.1 66 47.0
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.4e-07 59.7 75 41.3
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 1.4e-07 59.7 68 42.6
COL.COLO4_26496 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.8e-07 59.3 69 42.0
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 1.8e-07 59.3 79 36.7
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 1.8e-07 59.3 77 36.4
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 1.8e-07 59.3 75 40.0
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.3e-07 58.9 68 39.7
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.3e-07 58.9 68 41.2
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.3e-07 58.9 68 39.7
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 3.0e-07 58.5 71 40.8
COL.COLO4_08736 Corchorus olitorius HOM05D000955 ORTHO05D001429 3.0e-07 58.5 73 41.1
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 3.0e-07 58.5 70 41.4
Atru.chr13.662 Acer truncatum HOM05D000955 ORTHO05D001429 4.0e-07 58.2 82 35.4
CiPaw.15G059400 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.0e-07 58.2 75 37.3
COL.COLO4_26490 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.0e-07 58.2 82 35.4
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.0e-07 58.2 72 38.9
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 4.0e-07 58.2 68 41.2
CAN.G371.22 Capsicum annuum HOM05D000955 ORTHO05D001429 5.2e-07 57.8 68 42.6
CiPaw.15G059600 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.2e-07 57.8 69 37.7
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 5.2e-07 57.8 64 43.8
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 5.2e-07 57.8 76 39.5
Lsat_1_v5_gn_4_125340 Lactuca sativa HOM05D000955 ORTHO05D001429 5.2e-07 57.8 67 43.3
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 5.2e-07 57.8 67 38.8
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.2e-07 57.8 68 41.2
Sed0021895 Sechium edule HOM05D000955 ORTHO05D001429 5.2e-07 57.8 70 40.0
Solyc01g150126.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 5.2e-07 57.8 75 37.3
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 5.2e-07 57.8 75 37.3
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 6.8e-07 57.4 83 36.1
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.8e-07 57.4 87 35.6
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.8e-07 57.4 69 40.6
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 6.8e-07 57.4 69 40.6
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 6.8e-07 57.4 74 37.8
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 8.9e-07 57.0 70 42.9
CAN.G371.24 Capsicum annuum HOM05D000955 ORTHO05D001429 8.9e-07 57.0 74 40.5
CiPaw.15G059000 Carya illinoinensis HOM05D000955 ORTHO05D001429 8.9e-07 57.0 79 40.5
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 8.9e-07 57.0 68 39.7
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 8.9e-07 57.0 72 37.5
PGSC0003DMG400008043 Solanum tuberosum HOM05D000955 ORTHO05D001429 8.9e-07 57.0 61 44.3
Prupe.1G436700 Prunus persica HOM05D000955 ORTHO05D001429 1.2e-06 56.6 66 40.9
QL02p005131 Quercus lobata HOM05D000955 ORTHO05D001429 1.2e-06 56.6 79 35.4
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 1.5e-06 56.2 69 43.5
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 1.5e-06 56.2 70 41.4
Manes.05G173400 Manihot esculenta HOM05D000955 ORTHO05D001429 1.5e-06 56.2 72 38.9
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 1.5e-06 56.2 76 35.5
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.5e-06 56.2 68 38.2
Prupe.1G437100 Prunus persica HOM05D000955 ORTHO05D001429 1.5e-06 56.2 72 37.5
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 1.5e-06 56.2 68 38.2
COL.COLO4_26495 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.0e-06 55.8 67 43.3
Medtr1g019640 Medicago truncatula HOM05D000955 ORTHO05D001429 2.0e-06 55.8 61 44.3
Potri.008G079066 Populus trichocarpa HOM05D000955 ORTHO05D001429 2.0e-06 55.8 68 41.2
Prupe.1G436900 Prunus persica HOM05D000955 ORTHO05D001429 2.0e-06 55.8 72 37.5
Sed0019585 Sechium edule HOM05D000955 ORTHO05D001429 2.0e-06 55.8 82 35.4
Sed0024453 Sechium edule HOM05D000955 ORTHO05D001429 2.0e-06 55.8 69 39.1
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 2.6e-06 55.5 73 41.1
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.6e-06 55.5 64 39.1
COL.COLO4_26491 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.6e-06 55.5 72 37.5
Medtr1g019660 Medicago truncatula HOM05D000955 ORTHO05D001429 2.6e-06 55.5 61 45.9
Sabra14G0021000 Salix brachista HOM05D000955 ORTHO05D001429 2.6e-06 55.5 65 44.6
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 2.6e-06 55.5 75 37.3
Actinidia22623 Actinidia chinensis HOM05D000955 ORTHO05D001429 3.4e-06 55.1 67 40.3
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.4e-06 55.1 74 39.2
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 3.4e-06 55.1 74 39.2
Manes.05G173300 Manihot esculenta HOM05D000955 ORTHO05D001429 3.4e-06 55.1 92 37.0
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 4.4e-06 54.7 66 42.4
CAN.G371.23 Capsicum annuum HOM05D000955 ORTHO05D001429 4.4e-06 54.7 68 38.2
PGR031G2327 Punica granatum HOM05D000955 ORTHO05D001429 4.4e-06 54.7 65 40.0
Sed0010424 Sechium edule HOM05D000955 ORTHO05D001429 4.4e-06 54.7 73 39.7
Thecc.08G009600 Theobroma cacao HOM05D000955 ORTHO05D001429 4.4e-06 54.7 74 35.1
Thecc.08G009700 Theobroma cacao HOM05D000955 ORTHO05D001429 4.4e-06 54.7 71 39.4
COL.COLO4_26489 Corchorus olitorius HOM05D000955 ORTHO05D001429 5.7e-06 54.3 75 36.0
Lsat_1_v5_gn_6_113880 Lactuca sativa HOM05D000955 ORTHO05D001429 5.7e-06 54.3 71 36.6
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 7.5e-06 53.9 65 36.9
Gohir.A05G261550 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.5e-06 53.9 66 37.9
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.5e-06 53.9 68 38.2
Solyc12g088840.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 7.5e-06 53.9 68 36.8
Atru.chr13.679 Acer truncatum HOM05D000955 ORTHO05D001429 9.8e-06 53.5 57 45.6
ClCG05G019810 Citrullus lanatus HOM05D000955 ORTHO05D001429 9.8e-06 53.5 69 37.7
Rhsim07G0228800 Rhododendron simsii HOM05D000955 ORTHO05D001429 9.8e-06 53.5 72 37.5
Sed0006046 Sechium edule HOM05D000955 ORTHO05D001429 9.8e-06 53.5 66 36.4
PGSC0003DMG400008042 Solanum tuberosum HOM05D000955 ORTHO05D001429 9.8e-06 53.5 68 41.2
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 9.8e-06 53.5 75 38.7


User provided reference genes

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