Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 5.9e-261 903.7 460 100.0
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.1e-169 600.5 475 69.9
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 9.4e-166 587.4 461 68.8
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 6.1e-165 584.7 461 68.3
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 2.7e-157 559.3 461 66.4
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.0e-148 530.8 471 61.8
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.0e-145 518.1 473 60.0
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.2e-144 517.3 473 60.0
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.6e-143 511.5 473 60.0
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.1e-142 510.8 471 60.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.1e-142 510.8 473 59.2
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 9.5e-142 507.7 459 59.0
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.1e-141 506.5 468 59.8
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 3.6e-141 505.8 466 60.1
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 8.9e-140 501.1 455 58.2
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.4e-137 493.8 480 59.2
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 4.1e-137 492.3 458 58.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 9.2e-137 491.1 479 59.5
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 3.3e-134 482.6 476 60.3
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.6e-133 480.3 489 56.4
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 2.1e-133 479.9 467 57.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 7.5e-131 471.5 467 57.8
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.3e-127 460.7 415 61.2
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 3.9e-127 459.1 427 59.0
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.2e-123 447.6 487 55.6
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.5e-123 447.2 451 57.2
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 9.9e-123 444.5 484 55.4
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 9.9e-123 444.5 483 54.0
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.7e-122 443.7 487 55.4
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 6.4e-122 441.8 479 54.3
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 8.4e-122 441.4 482 55.4
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 8.4e-122 441.4 482 55.4
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.9e-121 440.3 490 52.9
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 9.2e-121 438.0 483 55.7
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.2e-120 437.6 482 55.2
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.0e-119 433.0 482 55.2
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.1e-118 431.0 424 58.7
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.9e-118 430.3 465 54.2
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.6e-118 428.7 379 61.5
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 4.7e-117 425.6 468 53.6
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 4.7e-117 425.6 391 59.1
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-116 424.5 391 58.8
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.8e-116 423.7 475 53.9
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.8e-116 423.7 391 58.8
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 5.2e-116 422.2 400 59.8
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 6.9e-116 421.8 506 50.8
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 6.9e-116 421.8 465 53.3
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.0e-115 420.2 444 55.6
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 9.9e-115 417.9 504 50.4
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.3e-114 417.5 475 52.6
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.7e-114 417.2 481 53.2
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.2e-114 416.8 484 52.5
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.4e-113 414.1 491 50.7
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 9.3e-113 411.4 490 51.2
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 4.6e-112 409.1 482 52.5
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 6.0e-112 408.7 481 52.6
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 6.0e-112 408.7 474 52.3
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.1e-110 404.4 471 51.2
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.9e-110 403.7 483 52.6
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.6e-110 402.1 477 52.2
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 9.6e-110 401.4 472 50.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.3e-109 401.0 386 60.1
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 2.1e-109 400.2 419 55.8
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 8.1e-109 398.3 494 49.6
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 9.0e-108 394.8 398 54.5
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.3e-106 391.0 431 53.6
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.7e-106 390.6 467 51.0
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 2.2e-106 390.2 436 51.4
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 2.9e-106 389.8 487 49.5
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 2.1e-104 383.6 465 48.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.1e-104 383.6 474 48.1
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 6.0e-104 382.1 481 48.9
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 8.7e-103 378.3 474 49.8
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.1e-102 377.9 465 48.2
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 2.1e-101 373.6 486 48.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 3.7e-101 372.9 471 48.8
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 8.1e-101 371.7 396 57.1
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.8e-100 370.5 461 49.7
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.5e-99 367.5 481 47.4
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.6e-99 366.7 380 55.8
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.5e-99 365.9 387 53.7
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 4.9e-98 362.5 463 49.9
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 4.9e-98 362.5 481 48.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.1e-97 361.3 473 47.8
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 6.0e-96 355.5 392 53.6
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.3e-95 353.6 413 52.3
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 2.3e-95 353.6 392 54.6
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 6.7e-95 352.1 464 49.4
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.9e-94 350.5 478 47.7
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.9e-94 350.5 474 46.8
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 4.3e-94 349.4 469 46.9
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 8.2e-93 345.1 496 44.8
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.1e-92 344.7 475 47.4
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.2e-91 341.3 335 57.6
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 4.5e-91 339.3 433 47.3
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.9e-90 335.9 429 44.1
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 8.4e-90 335.1 425 48.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.2e-89 333.2 345 54.2
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 5.5e-89 332.4 401 47.9
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 7.1e-89 332.0 471 45.2
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.7e-88 330.1 381 49.6
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.3e-87 327.0 372 52.2
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 2.1e-85 320.5 470 43.8
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.4e-84 317.8 490 44.3
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.4e-84 317.8 489 42.1
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.2e-80 304.7 484 43.4
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 6.1e-80 302.4 467 42.4
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.0e-79 301.6 485 42.9
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 3.9e-79 299.7 487 43.5
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.7e-79 298.9 495 41.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 8.2e-77 292.0 486 41.6
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.9e-75 285.8 287 56.8
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 7.7e-75 285.4 490 41.0
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 7.7e-75 285.4 490 41.4
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.2e-74 283.9 462 40.9
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 5.5e-73 279.3 453 39.5
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.5e-70 271.2 200 69.0
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 3.3e-70 270.0 481 39.9
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.2e-69 267.3 458 40.2
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.8e-68 264.2 200 67.5
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.8e-68 264.2 388 43.0
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.5e-67 261.2 337 46.3
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 3.4e-67 260.0 454 41.9
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.4e-65 254.6 436 39.2
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.5e-65 253.8 442 38.2
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.2e-65 253.4 436 39.0
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 4.7e-64 249.6 234 56.0
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 5.2e-63 246.1 397 42.3
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.5e-59 233.0 501 34.5
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.9e-57 227.6 412 36.7
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-53 214.5 379 37.7
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.2e-53 212.2 490 32.7
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.1e-52 211.8 196 56.1
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.1e-52 209.9 415 37.1
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.6e-51 208.0 306 42.2
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.4e-47 194.9 156 59.0
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 5.0e-42 176.4 418 33.0
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-41 174.9 385 35.3
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.7e-38 162.9 371 34.8
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.7e-37 161.4 173 52.0
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.7e-37 161.4 173 52.0
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 6.3e-37 159.5 313 39.3
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.4e-36 158.3 249 41.0
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.4e-36 158.3 249 41.0
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.4e-36 158.3 111 63.1
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 7.0e-36 156.0 172 48.8
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 9.2e-36 155.6 170 51.2
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 9.2e-36 155.6 354 30.8
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.6e-35 154.8 174 49.4
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 4.0e-31 140.2 317 37.2
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 5.2e-31 139.8 163 44.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 9.2e-28 129.0 155 48.4
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.4e-20 105.1 248 35.1
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 4.0e-15 87.0 84 57.1
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 6.0e-11 73.2 199 33.7
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.7e-08 63.5 110 30.0


User provided reference genes

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