Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.4e-127 458.0 236 100.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.4e-110 401.0 233 86.3
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 6.4e-110 401.0 235 86.4
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 7.1e-109 397.5 236 85.6
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.6e-108 394.8 236 84.7
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.7e-107 392.9 236 84.7
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.9e-107 391.7 236 83.5
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 6.6e-107 391.0 236 82.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.1e-106 390.2 234 84.6
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 3.3e-106 388.7 236 82.6
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 9.6e-106 387.1 236 83.9
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 9.6e-106 387.1 236 82.6
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 9.6e-106 387.1 233 82.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.6e-105 386.3 236 83.1
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 6.2e-105 384.4 233 84.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.1e-104 383.6 236 82.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.4e-104 383.3 233 82.8
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.4e-104 382.5 236 82.2
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 3.1e-104 382.1 236 80.9
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 3.1e-104 382.1 236 80.9
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 4.0e-104 381.7 233 81.5
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 9.0e-104 380.6 236 80.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.0e-103 379.4 236 78.4
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.6e-103 379.0 236 79.7
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 5.8e-103 377.9 236 81.4
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 9.9e-103 377.1 235 81.7
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 2.2e-102 375.9 236 80.5
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.9e-102 375.6 233 80.7
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 79.7
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 6.4e-102 374.4 231 82.3
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.1e-101 373.6 233 79.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.9e-101 372.9 236 79.7
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.9e-101 372.9 236 79.2
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.4e-101 372.5 236 79.2
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.4e-101 372.5 236 80.9
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 5.4e-101 371.3 236 80.1
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.2e-100 370.2 238 80.3
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.2e-100 370.2 236 78.4
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 4.6e-100 368.2 236 80.1
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.8e-99 366.3 233 78.5
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.8e-99 366.3 237 78.5
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 3.9e-99 365.2 238 80.3
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.5e-98 363.2 233 79.4
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.5e-98 362.5 235 76.6
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.5e-98 362.5 234 79.5
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.5e-98 362.5 233 79.0
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.6e-97 359.8 236 75.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.6e-97 359.8 236 75.4
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.6e-97 359.8 282 68.4
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 2.1e-97 359.4 236 74.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 2.1e-97 359.4 233 78.1
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 8.1e-97 357.5 260 70.0
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.1e-96 357.1 233 75.5
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.4e-96 356.7 236 75.0
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 2.4e-96 355.9 236 75.8
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 3.1e-96 355.5 235 75.7
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 4.0e-96 355.1 236 75.8
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 6.9e-96 354.4 236 75.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 6.9e-96 354.4 236 75.8
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 6.9e-96 354.4 236 75.8
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.5e-95 353.2 236 75.0
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.0e-95 352.8 236 73.7
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.0e-95 352.8 233 76.4
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.4e-95 352.1 236 74.6
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.8e-95 351.3 232 75.9
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.8e-95 351.3 236 72.5
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 7.6e-95 350.9 210 86.2
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.6e-95 350.9 236 73.3
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 8.4e-94 347.4 203 87.2
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.4e-93 346.7 272 67.3
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 7.1e-93 344.4 299 62.2
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.2e-92 343.6 234 78.6
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.2e-92 343.6 234 78.6
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 3.5e-92 342.0 235 73.6
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.8e-91 339.7 236 72.0
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.3e-91 339.3 236 75.4
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.1e-90 337.0 201 82.6
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 4.3e-90 335.1 206 81.1
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 7.4e-90 334.3 203 82.8
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.6e-89 333.2 201 82.6
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.8e-89 332.4 201 83.1
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 6.2e-89 331.3 236 69.9
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-88 330.5 224 75.4
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.4e-88 330.1 201 82.1
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 2.4e-88 329.3 236 70.8
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 9.0e-88 327.4 230 73.9
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.5e-87 326.6 235 70.2
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 3.4e-87 325.5 206 77.7
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 7.6e-87 324.3 224 71.4
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 7.6e-87 324.3 261 68.2
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.1e-85 320.5 235 68.9
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.1e-85 317.8 233 72.1
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.1e-84 316.2 187 82.9
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 3.5e-84 315.5 236 66.1
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.3e-83 313.5 201 78.6
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.8e-83 313.2 235 66.4
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.3e-83 312.8 225 72.0
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 6.7e-83 311.2 196 77.6
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.1e-82 310.5 218 72.9
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.1e-80 302.0 211 73.9
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.0e-80 300.8 234 64.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.0e-80 300.8 234 64.1
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.5e-79 300.1 234 64.1
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 2.0e-79 299.7 234 64.5
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 2.0e-79 299.7 234 63.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 3.4e-79 298.9 225 66.2
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.9e-79 298.1 167 88.0
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 9.4e-77 290.8 166 85.5
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 9.7e-74 280.8 167 86.8
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 4.8e-73 278.5 188 76.6
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.8e-72 276.6 188 73.9
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.4e-72 276.2 206 72.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 9.1e-72 274.2 223 62.3
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.0e-71 273.1 225 57.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.9e-69 266.5 230 63.5
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.9e-69 266.5 239 56.5
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.6e-68 263.5 228 57.0
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.8e-67 260.0 151 86.8
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.7e-66 254.2 237 62.4
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.7e-65 252.3 236 52.5
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 3.5e-63 245.7 147 81.6
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 4.5e-63 245.4 219 57.5
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.5e-63 245.4 201 66.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.0e-62 244.2 226 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.1e-53 214.2 167 62.9
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 4.2e-53 212.2 126 85.7
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 8.8e-51 204.5 135 74.1
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.6e-50 203.0 135 74.8
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.7e-47 193.0 236 48.3
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.2e-44 184.1 236 46.6
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.4e-42 176.0 104 85.6
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 3.4e-42 176.0 102 86.3
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 4.4e-42 175.6 106 83.0
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 7.5e-42 174.9 106 77.4
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 3.7e-41 172.6 236 46.6
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 2.9e-38 162.9 111 76.6
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 1.4e-35 154.1 284 38.4
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 4.1e-32 142.5 210 40.0
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 4.3e-29 132.5 142 48.6
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.7e-28 129.0 211 36.5
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.3e-27 126.7 76 77.6
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.2e-23 114.4 106 61.3
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.3e-22 110.2 221 33.5
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.3e-22 110.2 221 33.5
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 4.3e-21 105.9 74 70.3
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.2e-16 89.7 202 32.2
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.7e-15 86.7 49 79.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 4.6e-15 85.9 51 82.4
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 6.0e-15 85.5 65 66.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.7e-14 84.0 53 73.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.5e-13 80.1 52 75.0
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.1e-12 77.0 49 73.5
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.8e-10 68.9 95 41.1
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.7e-09 66.2 48 58.3
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 4.9e-09 65.9 50 56.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 3.5e-07 59.7 46 69.6
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 7.8e-07 58.5 70 52.9
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 2.3e-06 57.0 53 54.7


User provided reference genes

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