Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 0.0e+00 1129.8 574 100.0
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 5.6e-293 1010.4 605 85.8
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 7.9e-287 989.9 580 86.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.5e-282 975.7 533 91.2
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.8e-278 962.2 569 84.7
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 5.1e-278 960.7 567 85.9
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 2.4e-275 951.8 561 85.4
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.6e-274 948.3 579 83.8
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.9e-273 944.9 578 83.6
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.9e-273 944.9 579 83.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.8e-273 944.5 581 83.1
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 6.5e-273 943.7 581 83.0
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.2e-271 939.5 574 83.4
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.6e-271 939.1 573 83.4
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.0e-270 936.4 573 82.9
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.9e-270 934.5 567 82.9
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 8.7e-270 933.3 555 84.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 3.3e-269 931.4 572 82.0
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 3.3e-269 931.4 581 81.8
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.3e-269 931.0 578 82.4
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.3e-269 931.0 527 88.2
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 4.3e-269 931.0 572 82.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-268 929.5 572 82.7
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.3e-268 929.5 573 81.8
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 3.7e-268 927.9 558 83.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.4e-267 926.0 567 82.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-267 925.6 592 80.2
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.2e-266 922.9 573 81.3
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.0e-266 922.2 575 82.8
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 2.0e-266 922.2 544 85.5
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.6e-266 921.8 562 82.9
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.2e-265 918.7 520 87.9
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 2.9e-265 918.3 567 82.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 8.5e-265 916.8 540 85.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 3.2e-264 914.8 566 82.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 4.2e-264 914.4 596 79.4
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 7.2e-264 913.7 569 81.0
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 7.2e-264 913.7 527 86.7
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 9.4e-264 913.3 574 81.4
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 2.7e-263 911.8 548 83.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 6.1e-263 910.6 550 84.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.8e-262 909.1 561 81.6
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.9e-262 907.9 572 80.9
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 3.9e-262 907.9 572 80.9
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 8.8e-262 906.7 582 79.2
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.0e-261 905.6 536 84.3
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.5e-261 905.2 571 81.1
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 4.3e-261 904.4 564 81.4
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.3e-260 902.9 565 80.2
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 8.2e-260 900.2 573 80.6
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.1e-259 899.8 573 78.2
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.8e-259 899.0 569 79.8
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.1e-259 898.3 564 81.6
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 4.1e-259 897.9 551 82.9
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 5.3e-259 897.5 598 78.3
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.3e-259 897.5 567 79.7
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.3e-259 897.5 529 84.9
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 6.9e-259 897.1 589 78.3
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 9.1e-259 896.7 554 82.9
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.2e-258 896.3 521 85.4
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.9e-258 894.0 572 77.8
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.0e-257 893.3 574 79.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.0e-257 893.3 574 79.6
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.3e-257 892.9 562 81.1
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.7e-257 892.5 574 78.4
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.2e-257 892.1 557 80.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 2.2e-257 892.1 539 82.7
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.9e-257 891.7 536 83.4
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 3.8e-257 891.3 564 79.1
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 6.5e-257 890.6 557 81.3
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 8.5e-257 890.2 558 81.2
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 8.5e-257 890.2 558 81.2
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 8.5e-257 890.2 558 81.2
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 8.5e-257 890.2 569 79.6
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.5e-256 888.6 571 78.6
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 5.5e-256 887.5 541 83.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.5e-256 887.5 609 76.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-255 886.3 610 76.7
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.1e-255 885.6 567 79.7
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 4.7e-255 884.4 565 78.9
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 6.1e-255 884.0 527 83.3
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.1e-255 884.0 541 82.6
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.2e-252 875.5 561 78.3
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.8e-251 872.5 573 78.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 9.1e-251 870.2 553 79.2
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 2.6e-250 868.6 543 80.7
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.5e-248 862.8 538 80.7
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.5e-248 862.8 590 75.6
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.9e-248 862.4 566 76.3
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.7e-247 858.6 537 78.4
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.7e-247 857.8 545 79.6
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 3.3e-245 851.7 567 76.0
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.7e-244 849.4 563 76.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 8.2e-244 847.0 515 82.5
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.8e-243 845.9 569 75.6
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.7e-241 839.3 556 76.4
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.5e-240 835.5 555 78.0
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.6e-237 825.5 492 83.5
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 5.4e-235 817.8 539 77.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 5.4e-235 817.8 574 74.9
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 5.4e-235 817.8 476 86.1
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.0e-233 811.2 552 73.7
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.2e-232 808.5 470 86.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.4e-230 803.1 518 77.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 6.6e-225 784.3 484 81.4
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.9e-224 782.7 555 71.2
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.4e-219 765.8 452 82.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 4.1e-219 765.0 500 74.8
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.6e-218 763.1 497 74.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 7.8e-218 760.8 509 74.1
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 6.6e-217 757.7 450 82.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.9e-209 731.9 424 87.3
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.5e-208 729.2 540 71.1
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.1e-203 711.1 559 67.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 3.6e-199 698.7 542 65.5
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 3.6e-199 698.7 575 66.6
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.3e-192 675.6 576 63.7
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.8e-190 669.8 497 66.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 7.8e-186 654.4 547 65.4
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 3.0e-185 652.5 460 71.1
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 7.3e-184 647.9 568 58.3
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 8.4e-180 634.4 496 64.5
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 9.0e-166 587.8 318 91.2
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.0e-164 584.3 550 58.4
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.2e-164 583.2 502 62.5
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.4e-163 580.5 529 59.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.4e-158 563.1 341 85.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 3.1e-158 562.8 496 60.3
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.0e-158 561.2 495 59.8
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-157 560.8 496 60.1
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 8.5e-156 554.7 401 67.3
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 6.1e-138 495.4 331 73.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-133 480.7 493 53.8
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.1e-123 448.0 500 48.0
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 3.0e-121 439.9 590 47.5
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 7.8e-101 372.1 528 39.6
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-98 364.4 437 49.7
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.2e-90 335.9 359 54.3
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 1.2e-85 321.6 423 41.4
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.6e-74 283.5 571 37.3
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 9.9e-72 275.4 185 69.7
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.6e-69 268.1 170 84.7
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 8.7e-60 235.7 308 45.8
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.2e-54 217.2 504 33.9
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.8e-52 211.5 408 37.5
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.5e-46 189.9 129 75.2
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 8.7e-44 182.6 104 82.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.5e-40 171.8 106 84.9
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.4e-38 165.2 138 58.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.9e-38 164.9 113 79.6
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.9e-30 138.3 80 81.2
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.0e-28 132.5 95 76.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.0e-28 131.0 96 74.0
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-21 109.0 65 83.1
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.6e-21 107.5 124 42.7
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 3.9e-20 104.0 88 64.8
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 8.2e-18 96.3 71 71.8
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.2e-16 92.4 63 76.2
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-16 92.4 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 9.4e-14 82.8 50 82.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.4e-12 79.0 53 73.6
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-11 74.3 49 75.5
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 4.8e-10 70.5 43 79.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 8.2e-10 69.7 98 45.9
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 9.1e-09 66.2 148 35.1
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 4.5e-08 63.9 57 52.6
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 7.7e-08 63.2 52 59.6
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 8.5e-07 59.7 50 58.0
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 5.5e-06 57.0 44 56.8


User provided reference genes

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