Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 8.3e-134 481.1 401 100.0
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 1.0e-78 298.1 383 53.8
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.3e-78 297.7 388 50.5
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 1.9e-77 293.9 388 68.6
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 2.3e-75 287.0 388 54.9
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 8.7e-75 285.0 385 62.1
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.5e-74 284.3 385 66.0
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 3.3e-74 283.1 387 58.4
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 1.1e-72 278.1 388 50.8
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.8e-72 277.3 388 55.4
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 6.9e-72 275.4 341 83.9
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 5.9e-71 272.3 387 46.8
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 1.7e-70 270.8 395 49.6
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 2.2e-70 270.4 388 71.6
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.4e-69 267.7 385 46.2
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.9e-69 267.3 395 49.1
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 4.2e-69 266.2 390 63.8
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 9.3e-69 265.0 401 68.3
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 2.7e-68 263.5 383 68.9
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 7.9e-68 261.9 385 45.7
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.0e-67 261.5 395 53.7
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 1.3e-67 261.2 400 70.2
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 3.0e-67 260.0 383 70.0
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 8.7e-67 258.5 388 70.1
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 1.1e-66 258.1 398 53.3
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.1e-66 258.1 393 51.9
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 1.1e-66 258.1 393 51.7
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 1.5e-66 257.7 386 62.2
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.9e-66 257.3 388 70.4
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 5.7e-66 255.8 393 49.1
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 9.7e-66 255.0 400 66.5
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.2e-65 253.8 386 61.4
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 2.2e-65 253.8 388 69.8
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 4.8e-65 252.7 354 50.6
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 1.1e-64 251.5 412 47.3
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 1.1e-64 251.5 388 74.0
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 1.8e-64 250.8 386 68.4
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 5.3e-64 249.2 386 65.0
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 5.3e-64 249.2 424 65.3
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 9.1e-64 248.4 401 61.6
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 1.2e-63 248.1 388 71.6
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.0e-63 247.3 419 61.3
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 2.6e-63 246.9 386 64.8
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 2.6e-63 246.9 371 41.5
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 2.6e-63 246.9 394 59.1
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 3.4e-63 246.5 386 65.0
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 4.5e-63 246.1 388 62.6
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 4.5e-63 246.1 385 64.9
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 7.7e-63 245.4 398 56.5
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 2.2e-62 243.8 401 63.1
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 5.0e-62 242.7 386 65.8
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 8.5e-62 241.9 386 66.1
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 1.1e-61 241.5 386 65.3
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 1.1e-61 241.5 386 67.6
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.4e-61 241.1 386 63.5
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.4e-61 241.1 386 63.5
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 1.9e-61 240.7 388 64.9
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 3.2e-61 240.0 383 67.1
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 4.2e-61 239.6 399 67.9
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 7.2e-61 238.8 397 55.9
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 7.2e-61 238.8 399 66.2
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.2e-60 238.0 383 39.7
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 2.7e-60 236.9 388 70.6
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 6.1e-60 235.7 388 66.8
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 1.4e-59 234.6 398 65.6
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 1.8e-59 234.2 395 53.2
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 2.3e-59 233.8 388 69.6
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 5.1e-59 232.6 386 71.8
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 6.7e-59 232.3 388 63.1
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 6.7e-59 232.3 412 50.2
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 8.8e-59 231.9 386 37.6
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.1e-58 231.5 388 63.9
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 1.5e-58 231.1 346 67.1
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.5e-58 231.1 388 43.8
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 1.5e-58 231.1 398 65.1
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.5e-58 231.1 398 65.1
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.5e-58 231.1 398 65.1
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 1.5e-58 231.1 386 46.9
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 2.6e-58 230.3 346 52.3
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.3e-58 229.9 349 69.3
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 5.7e-58 229.2 410 67.1
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-57 228.0 385 66.5
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.2e-57 227.3 364 47.3
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 3.7e-57 226.5 388 69.6
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 4.8e-57 226.1 395 65.1
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 4.8e-57 226.1 388 68.0
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 1.8e-56 224.2 385 59.2
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 5.3e-56 222.6 386 70.5
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 6.9e-56 222.2 401 62.8
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 3.4e-55 219.9 388 68.3
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 7.7e-55 218.8 390 39.2
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 7.7e-55 218.8 365 67.9
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 1.0e-54 218.4 386 66.3
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-54 218.0 386 69.9
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 2.9e-54 216.9 493 56.6
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 6.5e-54 215.7 385 66.8
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 1.1e-53 214.9 355 74.9
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 1.9e-53 214.2 413 39.0
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 1.9e-53 214.2 341 66.0
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 3.2e-53 213.4 388 42.3
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 4.2e-53 213.0 383 70.2
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 2.7e-52 210.3 391 41.2
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 3.9e-51 206.5 382 43.5
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 5.2e-51 206.1 388 62.4
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 2.6e-50 203.8 383 62.9
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 9.7e-50 201.8 341 49.3
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.3e-49 201.4 394 34.5
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.7e-49 201.1 333 45.3
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 1.7e-49 201.1 383 58.0
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 4.8e-49 199.5 342 71.1
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 6.3e-49 199.1 386 60.9
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 3.1e-48 196.8 389 59.9
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.6e-47 194.5 342 68.7
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 1.6e-47 194.5 323 73.7
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 1.6e-47 194.5 614 45.4
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 2.6e-47 193.7 386 61.1
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 3.5e-47 193.4 403 58.8
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 4.5e-47 193.0 403 58.8
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 5.9e-47 192.6 384 62.0
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 1.0e-46 191.8 389 64.3
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 2.2e-46 190.7 387 65.4
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.2e-46 190.7 387 45.5
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.9e-46 190.3 312 61.2
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 8.5e-46 188.7 355 69.3
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.1e-45 188.3 388 63.7
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 1.2e-44 184.9 388 65.7
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 2.7e-44 183.7 387 62.3
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 1.0e-43 181.8 369 33.1
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 3.0e-43 180.3 388 63.7
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 5.2e-43 179.5 386 60.1
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 1.4e-40 171.4 400 59.8
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.2e-39 168.3 332 37.0
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 3.5e-39 166.8 397 59.2
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 1.7e-38 164.5 122 68.0
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.2e-38 164.1 383 30.0
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 2.2e-38 164.1 122 65.6
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 2.9e-38 163.7 277 78.7
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 1.1e-37 161.8 168 49.4
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 2.5e-37 160.6 109 70.6
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 4.2e-37 159.8 346 31.2
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.2e-36 158.3 106 73.6
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 2.7e-36 157.1 398 38.7
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 5.2e-35 152.9 126 60.3
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 6.8e-35 152.5 109 67.0
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 2.0e-34 151.0 104 71.2
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 7.5e-34 149.1 279 36.9
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 1.7e-33 147.9 108 67.6
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 4.8e-33 146.4 98 71.4
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 6.3e-33 146.0 122 58.2
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 7.0e-32 142.5 388 41.2
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 1.7e-30 137.9 122 56.6
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 6.5e-30 136.0 124 57.3
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 3.6e-28 130.2 129 52.7
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 1.7e-25 121.3 410 51.7
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 4.9e-25 119.8 354 28.0
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 3.1e-24 117.1 381 26.8
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 5.4e-24 116.3 113 52.2
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 1.2e-23 115.2 105 55.2
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.0e-22 112.1 383 26.9
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.7e-22 111.3 77 66.2
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 5.0e-22 109.8 72 69.4
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 2.1e-20 104.4 391 26.6
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.8e-20 104.0 352 27.6
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 1.8e-19 101.3 78 57.7
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 8.3e-17 92.4 387 56.3
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 1.1e-16 92.0 366 41.5
BolC6t38646H Brassica oleracea HOM05D003913 ORTHO05D004803 6.6e-14 82.8 119 43.7
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 2.5e-13 80.9 53 66.0
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 9.5e-13 79.0 53 64.2
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 1.6e-12 78.2 42 76.2
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 2.1e-12 77.8 42 73.8
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 6.6e-06 56.2 44 59.1


User provided reference genes

Program Settings