Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 8.7e-48 193.4 101 100.0
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 3.0e-32 141.7 89 87.6
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 4.1e-21 104.8 69 82.6
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.2e-20 103.2 69 82.6
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.5e-20 102.8 69 79.7
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.7e-19 99.4 69 76.8
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 5.0e-19 97.8 68 76.5
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 8.5e-19 97.1 69 72.5
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 1.4e-18 96.3 69 75.4
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 3.2e-18 95.1 69 75.4
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 7.2e-18 94.0 69 76.8
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.2e-17 93.2 69 71.0
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.2e-17 93.2 68 72.1
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.2e-17 93.2 69 69.6
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.6e-17 92.8 69 72.5
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.6e-17 92.8 69 73.9
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.1e-17 92.4 69 73.9
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 6.1e-17 90.9 69 72.5
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-16 90.1 69 68.1
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.0e-16 90.1 69 72.5
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.8e-16 89.4 69 69.6
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.0e-16 88.6 69 66.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.9e-16 88.2 69 66.7
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 3.9e-16 88.2 69 66.7
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 5.1e-16 87.8 67 70.1
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 8.8e-16 87.0 69 68.1
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 8.8e-16 87.0 69 69.6
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.1e-15 86.7 69 69.6
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.6e-15 85.5 63 71.4
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.6e-15 85.5 67 71.6
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.4e-15 84.7 69 68.1
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 7.4e-15 84.0 67 70.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 9.7e-15 83.6 69 65.2
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 9.7e-15 83.6 69 65.2
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.7e-14 82.8 68 64.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 2.2e-14 82.4 68 64.7
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 2.8e-14 82.0 67 67.2
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 3.7e-14 81.6 69 65.2
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.7e-14 81.6 69 65.2
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 3.7e-14 81.6 69 65.2
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 6.3e-14 80.9 69 63.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 6.3e-14 80.9 69 62.3
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 6.3e-14 80.9 69 65.2
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 6.3e-14 80.9 68 63.2
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.1e-13 80.1 69 62.3
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.8e-13 79.3 68 60.3
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.8e-13 79.3 69 62.3
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 2.4e-13 79.0 68 63.2
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 2.4e-13 79.0 69 63.8
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 3.1e-13 78.6 69 59.4
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 5.3e-13 77.8 57 73.7
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.2e-12 76.6 69 58.0
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.2e-12 76.6 69 62.3
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 1.2e-12 76.6 67 65.7
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.6e-12 75.5 69 60.9
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 3.5e-12 75.1 55 69.1
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 3.5e-12 75.1 69 62.3
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 4.5e-12 74.7 68 60.3
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 4.5e-12 74.7 69 58.0
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 7.7e-12 73.9 69 55.1
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.2e-11 72.4 67 59.7
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.2e-11 72.4 69 56.5
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.8e-11 71.6 69 60.9
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 5.0e-11 71.2 59 66.1
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 8.5e-11 70.5 68 58.8
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 8.5e-11 70.5 61 63.9
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.5e-10 68.9 68 54.4
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.2e-10 68.6 55 67.3
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.2e-10 68.2 74 52.7
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 5.5e-10 67.8 51 66.7
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.2e-10 67.4 69 55.1
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 7.2e-10 67.4 67 55.2
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.2e-09 66.6 51 66.7
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 2.1e-09 65.9 98 44.9
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 2.7e-09 65.5 46 71.7
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 6.1e-09 64.3 69 53.6
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 8.0e-09 63.9 69 49.3
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.0e-08 63.5 52 65.4
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-08 63.2 45 68.9
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.3e-08 62.4 69 55.1
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 5.2e-08 61.2 51 62.7
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.2e-08 61.2 51 64.7
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 6.7e-08 60.8 52 63.5
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.7e-08 60.8 69 53.6
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 6.7e-08 60.8 69 53.6
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 8.8e-08 60.5 45 62.2
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 8.8e-08 60.5 69 49.3
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.1e-07 60.1 54 59.3
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-07 60.1 53 62.3
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.5e-07 59.7 69 52.2
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 3.3e-07 58.5 51 56.9
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 3.3e-07 58.5 136 36.0
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.3e-06 56.6 69 46.4
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.3e-06 56.6 69 46.4
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.8e-06 55.5 69 44.9
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.8e-06 55.5 36 75.0
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.8e-06 55.5 36 75.0
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 6.3e-06 54.3 35 80.0
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 6.3e-06 54.3 41 65.9
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 6.3e-06 54.3 38 73.7
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 6.3e-06 54.3 41 68.3
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 6.3e-06 54.3 35 77.1
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 8.2e-06 53.9 36 72.2


User provided reference genes

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