Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 6.5e-230 800.4 420 100.0
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 7.3e-165 584.3 422 74.9
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 7.6e-146 521.2 438 67.8
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.6e-127 460.3 399 63.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.3e-125 452.2 423 61.5
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.3e-124 450.7 321 76.0
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.4e-123 446.4 419 61.8
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 5.8e-122 441.8 401 61.6
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.2e-121 439.9 407 62.4
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 6.5e-121 438.3 418 59.6
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 7.9e-119 431.4 410 60.5
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 6.7e-118 428.3 418 59.3
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.5e-117 427.2 406 60.3
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.7e-117 425.2 404 60.4
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.5e-114 417.2 399 59.6
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.9e-113 412.9 418 57.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 2.9e-113 412.9 365 63.3
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 2.9e-113 412.9 406 57.1
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 8.5e-113 411.4 417 57.6
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.1e-112 411.0 362 64.1
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 3.2e-112 409.5 421 56.5
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 5.5e-112 408.7 407 59.5
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 2.7e-111 406.4 401 58.4
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.7e-111 406.4 365 62.7
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.9e-111 404.8 383 62.9
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 3.9e-110 402.5 422 56.2
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 6.7e-110 401.7 404 58.9
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 6.7e-110 401.7 423 54.8
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 6.3e-108 395.2 410 58.0
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 6.3e-108 395.2 407 58.5
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.1e-107 392.5 356 61.0
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.3e-107 392.1 422 58.1
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.4e-106 389.4 358 60.9
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.7e-106 388.3 345 61.4
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 6.5e-105 385.2 409 55.0
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.4e-104 384.0 412 57.5
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.4e-102 377.5 364 60.2
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 5.1e-102 375.6 393 57.5
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 6.7e-102 375.2 412 55.8
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 8.8e-102 374.8 402 57.5
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.5e-101 374.0 404 57.7
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 7.4e-101 371.7 399 56.6
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.8e-100 369.8 417 52.5
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 3.7e-100 369.4 404 56.4
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 6.3e-100 368.6 360 60.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.8e-99 367.1 399 53.9
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 2.4e-99 366.7 418 51.7
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.9e-98 362.1 387 55.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.0e-97 361.3 407 56.5
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 8.5e-97 358.2 412 53.6
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.1e-96 357.8 410 53.9
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.6e-95 354.0 459 50.1
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.1e-93 347.8 399 53.1
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 2.8e-92 343.2 387 55.3
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 3.7e-92 342.8 369 54.5
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 8.2e-92 341.7 406 52.2
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 8.2e-92 341.7 401 53.1
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.8e-91 340.5 378 54.8
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 3.1e-91 339.7 393 53.7
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 9.1e-91 338.2 298 62.8
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.0e-90 337.0 369 53.7
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.7e-89 334.0 410 48.3
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.2e-89 333.6 422 49.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.9e-89 333.2 409 49.1
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.1e-88 331.3 400 51.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.9e-88 330.5 402 50.2
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.2e-87 327.8 408 49.8
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.2e-87 327.8 406 49.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.8e-86 323.9 390 51.8
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.3e-86 323.6 408 48.5
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 4.0e-86 322.8 257 68.1
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 6.7e-86 322.0 230 73.0
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 8.8e-86 321.6 394 49.7
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 8.8e-86 321.6 425 45.9
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.5e-85 320.9 399 52.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.0e-85 320.5 363 54.8
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.3e-84 317.8 449 47.7
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.3e-84 317.8 449 47.7
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 4.8e-84 315.8 365 54.5
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 3.1e-83 313.2 376 51.3
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 3.1e-83 313.2 258 66.3
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 7.7e-82 308.5 405 48.1
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 7.2e-80 302.0 416 48.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 3.6e-79 299.7 400 48.5
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 6.1e-79 298.9 255 66.3
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.4e-78 297.7 372 49.7
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 5.2e-78 295.8 418 47.4
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 2.6e-77 293.5 363 49.9
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 9.8e-77 291.6 400 47.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.7e-76 290.8 400 47.8
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 4.8e-76 289.3 366 50.5
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 6.3e-76 288.9 372 47.8
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 8.3e-76 288.5 399 47.6
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.4e-75 287.7 243 63.4
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 5.4e-75 285.8 191 77.0
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 4.5e-74 282.7 289 55.7
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 4.5e-74 282.7 405 46.2
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.9e-74 282.3 389 49.1
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.1e-72 278.1 366 49.2
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-72 277.7 393 46.8
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 3.3e-72 276.6 425 44.5
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 4.2e-72 276.2 400 46.8
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 5.2e-70 269.2 410 42.9
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 5.2e-70 269.2 407 44.2
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 4.4e-69 266.2 312 53.5
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.2e-68 263.8 292 52.1
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.8e-68 263.5 393 44.8
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.1e-67 261.5 401 43.6
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.3e-65 253.8 400 44.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.8e-61 238.4 316 47.5
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 9.8e-61 238.4 423 41.1
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 3.5e-58 229.9 303 49.2
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 4.6e-58 229.6 174 70.1
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.7e-57 227.6 288 49.0
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 7.3e-56 222.2 372 40.1
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.1e-54 218.4 169 69.8
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.5e-53 214.5 409 39.1
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.9e-51 207.6 371 41.0
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.9e-51 207.6 371 41.0
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 8.6e-49 198.7 360 41.1
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.6e-47 193.4 217 53.9
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.8e-45 186.0 272 44.1
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 9.2e-43 178.7 373 37.8
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.2e-42 178.3 151 61.6
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 2.1e-42 177.6 321 39.9
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.4e-35 154.1 139 59.0
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 9.2e-35 152.1 183 51.4
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.7e-34 150.6 250 41.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.1e-26 124.4 155 52.3
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.1e-22 110.5 236 38.6
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 6.9e-22 109.4 137 53.3
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.0e-21 107.8 137 52.6
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-19 102.1 86 65.1
CiPaw.14G124400 Carya illinoinensis HOM05D000009 ORTHO05D000008 9.6e-16 89.0 103 51.5
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.3e-12 78.6 95 49.5
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.4e-11 75.1 92 46.7
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.6e-10 71.6 103 40.8
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.5e-10 70.5 124 36.3
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.9e-09 67.0 92 42.4
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.7e-09 65.9 107 41.1
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 3.7e-07 60.5 96 37.5
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.4e-06 57.8 51 56.9


User provided reference genes

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